Non-Coding RNA Search

Pig4-TMW8065F16

Sequence:


               
               AGGCACAGGGCACCTTCCGTCCCCGGTGGCAACTGACGGGATTTAACCGCCTTTTGGGAC
ACAATGGTTAAGCCGGGACGGAAGGAGTGTGGGCAGAAGGAGCAGGTATCAATGGTTTTA
AACGGCGTCTGTCTCTCTGCGTCTCTCCTGACGTGAGGCAGTGAAACGCGTTATCGAGGA
GGCCCGGAAAGTGGCTAAGTGCGTTTGACACACGCCAACTCCCTGCCTCCACACTGGATA
ATTGCATTGTCAACTGTTCAGCGAGGTGGCAGGTGACACTGCAGGCCGATTGATTGTCCC
GCATCGCAGCTCCCCAGACTGTCAGCTCCCCAATCGATGGCGTTTACACAAGACACCGTA
ACTGCATCTGTAACTAATTCCAGTGTAAAACTCTCCGGAAGCTGCTTCTGCGCCTGCACC
CCACCCCCACCCCGCCCCCGCCTTTGCGAGCAGGTCCTTTCTCCCTGGGCTCTGGTTTTG
TTGGGAGCAGCAGGTGAGGAAATCGATGGCTCCTTTTTTGTGGTTTCAGGTTCCAGGACG
TTACTCCCCCCAGTAAGCGGGCATCTCCAGTTTCTCAATCGATCATCTGATCAATTGATT
AAATTAAAGCTGATTTTTTTTTTTTTCCTCCTTCCATGATGGCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCACAGGGCACCTTCCGTCCCCGGTGGCAACTGACGGGATTTAACCGCCTTTTGGGAC
ACAATGGTTAAGCCGGGACGGAAGGAGTGTGGGCAGAAGGAGCAGGTATCAATGGTTTTA
AACGGCGTCTGTCTCTCTGCGTCTCTCCTGACGTGAGGCAGTGAAACGCGTTATCGAGGA
GGCCCGGAAAGTGGCTAAGTGCGTTTGACACACGCCAACTCCCTGCCTCCACACTGGATA
ATTGCATTGTCAACTGTTCAGCGAGGTGGCAGGTGACACTGCAGGCCGATTGATTGTCCC
GCATCGCAGCTCCCCAGACTGTCAGCTCCCCAATCGATGGCGTTTACACAAGACACCGTA
ACTGCATCTGTAACTAATTCCAGTGTAAAACTCTCCGGAAGCTGCTTCTGCGCCTGCACC
CCACCCCCACCCCGCCCCCGCCTTTGCGAGCAGGTCCTTTCTCCCTGGGCTCTGGTTTTG
TTGGGAGCAGCAGGTGAGGAAATCGATGGCTCCTTTTTTGTGGTTTCAGGTTCCAGGACG
TTACTCCCCCCAGTAAGCGGGCATCTCCAGTTTCTCAATCGATCATCTGATCAATTGATT
AAATTAAAGCTGATTTTTTTTTTTTTCCTCCTTCCATGATGGCCCAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               118-277, - strand, RNAz p=0.588969
               

               
               502-650, - strand, RNAz p=0.860718

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-277, - strand, RNAz p=0.588969
               

               
               502-650, - strand, RNAz p=0.860718

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               156-258, - strand, RNAmicro p=0.960342

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               156-258, - strand, RNAmicro p=0.960342

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-650, gnl|bosTau2|chr3 (70542254-70541592)
               

               
               1-650, gnl|Hg17|chr1 (44775193-44775843)
               

               
               1-650, gnl|Mm7|chr4 (116657998-116657351)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-650, gnl|bosTau2|chr3 (70542254-70541592)
               

               
               1-650, gnl|Hg17|chr1 (44775193-44775843)
               

               
               1-650, gnl|Mm7|chr4 (116657998-116657351)

	118-277, - strand, RNAz p=0.588969
	502-650, - strand, RNAz p=0.860718

	1-650, gnl\|bosTau2\|chr3 (70542254-70541592)
	1-650, gnl\|Hg17\|chr1 (44775193-44775843)
	1-650, gnl\|Mm7\|chr4 (116657998-116657351)