Non-Coding RNA Search

Pig4-TMW8065I01

Sequence:


               
               GCTGTGGCAGAAGTGGTTTCCTCTGGCCCCGTAGGGTATATGTGAGAGAAGGAAATGCCT
TGCAGTCATAAACCCTTAAGAATGGTTTTGAGGGCCAGAGTACCTGGATTTCGAAGCCAG
CTTTTACTAGCTGGGTGCCTTGGAAGAAGCGAACTTCTGGGCCTCAATTTCTTCATCTGT
AAAATGCAAATAGTAATAACTACATCATAAGAATCAAATGAGTTAACAGCTAGAAAGTGC
TTAGCACAGTGCCTGGCAAATAGAAGGTGCTCATGAGCCTTTGCTGCTGCTCGTATTGCT
GTTATTCTCTCCACCCCGCCAAGGTGAGAGCACTGTTGGCCAGAGCGCATTGCCTTTTCA
GGCTTCAAAGAGCAAACCCATCTTGGTCTGAAACCAGTACTGCAGGTTTCAGAATTTCAG
GGCCTCCCCTGGCACTTCTGTTCGCTCATCTTTTAAAACGGGCTTTCCAAGCAGGGCTCT
GAAACCCAACTGTTTCAAAAAGCATCTAAGCCGGGCCTGGCTTTCAGGAACAATTGAGTG
TCGTCACTGTTTCTCTTTCCCATCTCCAAGTGACGTAGTGCTCAGGGCTGTGCAGTTATC
TCTCCACCACACACCCTGTTGTGTTCTTGACAAGATATATTTGATGTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGGCAGAAGTGGTTTCCTCTGGCCCCGTAGGGTATATGTGAGAGAAGGAAATGCCT
TGCAGTCATAAACCCTTAAGAATGGTTTTGAGGGCCAGAGTACCTGGATTTCGAAGCCAG
CTTTTACTAGCTGGGTGCCTTGGAAGAAGCGAACTTCTGGGCCTCAATTTCTTCATCTGT
AAAATGCAAATAGTAATAACTACATCATAAGAATCAAATGAGTTAACAGCTAGAAAGTGC
TTAGCACAGTGCCTGGCAAATAGAAGGTGCTCATGAGCCTTTGCTGCTGCTCGTATTGCT
GTTATTCTCTCCACCCCGCCAAGGTGAGAGCACTGTTGGCCAGAGCGCATTGCCTTTTCA
GGCTTCAAAGAGCAAACCCATCTTGGTCTGAAACCAGTACTGCAGGTTTCAGAATTTCAG
GGCCTCCCCTGGCACTTCTGTTCGCTCATCTTTTAAAACGGGCTTTCCAAGCAGGGCTCT
GAAACCCAACTGTTTCAAAAAGCATCTAAGCCGGGCCTGGCTTTCAGGAACAATTGAGTG
TCGTCACTGTTTCTCTTTCCCATCTCCAAGTGACGTAGTGCTCAGGGCTGTGCAGTTATC
TCTCCACCACACACCCTGTTGTGTTCTTGACAAGATATATTTGATGTCAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               4-114, - strand, RNAz p=0.976901
               

               
               300-499, - strand, RNAz p=0.997201

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-114, - strand, RNAz p=0.976901
               

               
               300-499, - strand, RNAz p=0.997201

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               360-466, - strand, RNAmicro p=0.977768

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               360-466, - strand, RNAmicro p=0.977768

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-647, gnl|bosTau2|chr19 (29638388-29639035)
               

               
               4-647, gnl|Hg17|chr17 (45194068-45193428)
               

               
               4-647, gnl|Mm7|chr11 (95448332-95448937)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-647, gnl|bosTau2|chr19 (29638388-29639035)
               

               
               4-647, gnl|Hg17|chr17 (45194068-45193428)
               

               
               4-647, gnl|Mm7|chr11 (95448332-95448937)

	4-114, - strand, RNAz p=0.976901
	300-499, - strand, RNAz p=0.997201

	4-647, gnl\|bosTau2\|chr19 (29638388-29639035)
	4-647, gnl\|Hg17\|chr17 (45194068-45193428)
	4-647, gnl\|Mm7\|chr11 (95448332-95448937)