Non-Coding RNA Search

Pig4-TMW8065J08

Sequence:


               
               TCACCAGCAGGTCAGCCACAGTGGGCAAAATCCCCAGAGTCGTTTGCACGTGTTGGTCGG
TCCACCGGTCGGAAGACAAGCATGGATGGGGCTCAGAATCAGGACGATGGGTATCTGTGT
CTCAGTGCCCGGACAAACTTGCAGTACCGAAGTTTGCCAAGGCCCAGTAAGTCCACCAGC
CGGAACGGGGCTGGGAACAGGTCTAGTACCAGCAGCATCGATTCCAACATCAGCAGCAAG
TCAGCAGGCCTGCCGGTGCCCAAGCTGAGGGAACGTTCCAAAACAGCACTAGGCAGCTCT
CTGCCCGGTCTGGTCAACCAGACTGATAAGGAGAGAGGCATCTCATCCGACAATGAGAGC
GTGGCTTCCTGTAAATCAGTGAAGGTGACCCCAGCAGCCCAGCCGGTGTCCAGCGCGGCT
CAGGCCACTCTCCAGCCAGGGGCCAAGTACCCCGATGTGGCCTCTCCCACGCTTCGCAGA
CTCTTTGGTGGGAAGCCTGCCAAGCAAGTGCCCATCGCCACAGCGGAGAACATGAAAAAC
TCAGTGGTCATTTCCAACCCTCATGCCACCTTGAGCCAGCCAGGTAACTTAGAGTCCCCC
TCGGGCAGCGGCGTCCTGAGCAGCGGGAGCAGCAGCCCTCTGTACAGTAAGAATGTGGAC
AGCACCCAGTCCCCTCTAGCCTCCAGCCCCAGTTCCGCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACCAGCAGGTCAGCCACAGTGGGCAAAATCCCCAGAGTCGTTTGCACGTGTTGGTCGG
TCCACCGGTCGGAAGACAAGCATGGATGGGGCTCAGAATCAGGACGATGGGTATCTGTGT
CTCAGTGCCCGGACAAACTTGCAGTACCGAAGTTTGCCAAGGCCCAGTAAGTCCACCAGC
CGGAACGGGGCTGGGAACAGGTCTAGTACCAGCAGCATCGATTCCAACATCAGCAGCAAG
TCAGCAGGCCTGCCGGTGCCCAAGCTGAGGGAACGTTCCAAAACAGCACTAGGCAGCTCT
CTGCCCGGTCTGGTCAACCAGACTGATAAGGAGAGAGGCATCTCATCCGACAATGAGAGC
GTGGCTTCCTGTAAATCAGTGAAGGTGACCCCAGCAGCCCAGCCGGTGTCCAGCGCGGCT
CAGGCCACTCTCCAGCCAGGGGCCAAGTACCCCGATGTGGCCTCTCCCACGCTTCGCAGA
CTCTTTGGTGGGAAGCCTGCCAAGCAAGTGCCCATCGCCACAGCGGAGAACATGAAAAAC
TCAGTGGTCATTTCCAACCCTCATGCCACCTTGAGCCAGCCAGGTAACTTAGAGTCCCCC
TCGGGCAGCGGCGTCCTGAGCAGCGGGAGCAGCAGCCCTCTGTACAGTAAGAATGTGGAC
AGCACCCAGTCCCCTCTAGCCTCCAGCCCCAGTTCCGCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-359, - strand, RNAz p=0.566914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.566914

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-479, gnl|bosTau2|chr29 (17533227-17532750)
               

               
               1-479, gnl|Hg17|chr11 (20023315-20023792)
               

               
               1-479, gnl|Mm7|chr7 (45768729-45769206)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr29 (17533227-17532750)
               

               
               1-479, gnl|Hg17|chr11 (20023315-20023792)
               

               
               1-479, gnl|Mm7|chr7 (45768729-45769206)

	1-479, gnl\|bosTau2\|chr29 (17533227-17532750)
	1-479, gnl\|Hg17\|chr11 (20023315-20023792)
	1-479, gnl\|Mm7\|chr7 (45768729-45769206)