Non-Coding RNA Search

Pig4-TMW8066H20

Sequence:


               
               GGGTAAACCCCGTGACAGCGCTGACCCTGCTTGAGAAGATGAAGGACACGAGCCGCAAGA
ACAACATGTTTGCACAGTTTCGGAAAAATGAGCGAGACAAGCAGAAATTGATTGACACTG
TGGCCAAGCAACTCCGGGGACTCATCAGCAGCCACCACTCGTGAAGGCTGGCCTCGGGCC
GACAGAGGCCGCTCGCTGCAGCCCCGGATCCCTGGAGCCAGCGCTGGCTGGCCCTGCATT
TGTGCATTCTTCTTCAAAGAGAGCAGATGTATTTTTTTAATAACCCATGTACAGTATTCG
CATAACCCTTCCCTTGAGTAACAGAGGCGCGAGAGTCAGCAAGTCCATGAGAGGTTGCTA
GGCTGGGATTCAGGCAAAGTTACAGCACACTGTCTGTCCCTTCCTAGGGATGGTCGTGTC
ACCTGTCCCAGTATGACCAGCCACCTTTCATCCATGGCTCTAGAGCTTAGGTCTGGGCTC
AGGAACTACACAAACAAAATGGGTGCTTGGCACTGGGAGGGAGGTGAGTAGGCAGGAAGT
ACATCCTGTTGGCTCCTAGGTGCCCCATTCACTGCAGAGGGGAGGCCGATTCTTCTTGAC
ACAAAGAAAGAGCCTGGAAAACAGTTCTGTTTAGCGTAGGAAAGACCAGCGCCCAGTTCC
CGAGTTGTGAGGTTCAGCTTCTCAGTGCACTGACTTTCACTGATCAGGGAACAAGTGTGG
CAGGTGGCAAGATGATGGCTTCACCCCAATACCCCCCTCCCCCTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTAAACCCCGTGACAGCGCTGACCCTGCTTGAGAAGATGAAGGACACGAGCCGCAAGA
ACAACATGTTTGCACAGTTTCGGAAAAATGAGCGAGACAAGCAGAAATTGATTGACACTG
TGGCCAAGCAACTCCGGGGACTCATCAGCAGCCACCACTCGTGAAGGCTGGCCTCGGGCC
GACAGAGGCCGCTCGCTGCAGCCCCGGATCCCTGGAGCCAGCGCTGGCTGGCCCTGCATT
TGTGCATTCTTCTTCAAAGAGAGCAGATGTATTTTTTTAATAACCCATGTACAGTATTCG
CATAACCCTTCCCTTGAGTAACAGAGGCGCGAGAGTCAGCAAGTCCATGAGAGGTTGCTA
GGCTGGGATTCAGGCAAAGTTACAGCACACTGTCTGTCCCTTCCTAGGGATGGTCGTGTC
ACCTGTCCCAGTATGACCAGCCACCTTTCATCCATGGCTCTAGAGCTTAGGTCTGGGCTC
AGGAACTACACAAACAAAATGGGTGCTTGGCACTGGGAGGGAGGTGAGTAGGCAGGAAGT
ACATCCTGTTGGCTCCTAGGTGCCCCATTCACTGCAGAGGGGAGGCCGATTCTTCTTGAC
ACAAAGAAAGAGCCTGGAAAACAGTTCTGTTTAGCGTAGGAAAGACCAGCGCCCAGTTCC
CGAGTTGTGAGGTTCAGCTTCTCAGTGCACTGACTTTCACTGATCAGGGAACAAGTGTGG
CAGGTGGCAAGATGATGGCTTCACCCCAATACCCCCCTCCCCCTAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47186938|emb|CAF87131.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47186938|emb|CAF87131.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               158-272, - strand, RNAz p=0.85728

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-272, - strand, RNAz p=0.85728

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               38-756, gnl|bosTau2|chr11 (11188819-11188092)
               

               
               38-756, gnl|canFam2|chr17 (53680702-53679495)
               

               
               38-756, gnl|dasNov1|scaffold_42584 (6772-5693)
               

               
               38-756, gnl|echTel1|scaffold_313261 (48855-50051)
               

               
               38-756, gnl|hg17|chr2 (72316764-72317956)
               

               
               38-756, gnl|Hg17|chr2 (72318245-72317531)
               

               
               38-756, gnl|loxAfr1|scaffold_40843 (4-1224)
               

               
               38-756, gnl|mm7|chr6 (84649552-84650542)
               

               
               38-756, gnl|Mm7|chr6 (84650827-84650210)
               

               
               38-756, gnl|oryCun1|scaffold_200205 (67563-66384)
               

               
               38-756, gnl|panTro1|chr12 (74718705-74719897)
               

               
               38-756, gnl|rheMac2|chr13 (72430881-72432072)
               

               
               38-756, gnl|rn3|chr4 (119034904-119035903)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-756, gnl|bosTau2|chr11 (11188819-11188092)
               

               
               38-756, gnl|canFam2|chr17 (53680702-53679495)
               

               
               38-756, gnl|dasNov1|scaffold_42584 (6772-5693)
               

               
               38-756, gnl|echTel1|scaffold_313261 (48855-50051)
               

               
               38-756, gnl|hg17|chr2 (72316764-72317956)
               

               
               38-756, gnl|Hg17|chr2 (72318245-72317531)
               

               
               38-756, gnl|loxAfr1|scaffold_40843 (4-1224)
               

               
               38-756, gnl|mm7|chr6 (84649552-84650542)
               

               
               38-756, gnl|Mm7|chr6 (84650827-84650210)
               

               
               38-756, gnl|oryCun1|scaffold_200205 (67563-66384)
               

               
               38-756, gnl|panTro1|chr12 (74718705-74719897)
               

               
               38-756, gnl|rheMac2|chr13 (72430881-72432072)
               

               
               38-756, gnl|rn3|chr4 (119034904-119035903)

	38-756, gnl\|bosTau2\|chr11 (11188819-11188092)
	38-756, gnl\|canFam2\|chr17 (53680702-53679495)
	38-756, gnl\|dasNov1\|scaffold_42584 (6772-5693)
	38-756, gnl\|echTel1\|scaffold_313261 (48855-50051)
	38-756, gnl\|hg17\|chr2 (72316764-72317956)
	38-756, gnl\|Hg17\|chr2 (72318245-72317531)
	38-756, gnl\|loxAfr1\|scaffold_40843 (4-1224)
	38-756, gnl\|mm7\|chr6 (84649552-84650542)
	38-756, gnl\|Mm7\|chr6 (84650827-84650210)
	38-756, gnl\|oryCun1\|scaffold_200205 (67563-66384)
	38-756, gnl\|panTro1\|chr12 (74718705-74719897)
	38-756, gnl\|rheMac2\|chr13 (72430881-72432072)
	38-756, gnl\|rn3\|chr4 (119034904-119035903)