Non-Coding RNA Search

Pig4-TMW8066N04

Sequence:


               
               GTTTGTAAGTATGTGTCGTCTTAGTTTTGTTTGGTTTGGTTTTTTTCATTTAGTTTGAGT
CTGTTCATTTGGTGTGTTTTCTACCTCTGGTCTTATTTGTGGTACATAATTTCAAATAAA
CACTCATACGAAAACAGAAATTTCATAGAAGTAATAATAAGGTGAACCAGTAAATACTTT
TTATTTTTTCAGCCATTTCAGTTAACCCTGCAATTAAAGAATGTCCAAATAAATCTTCAT
TTGCGGAATTTCTTATTCTCATAAATCAAATATCTGACAACTTGCCCTTGTGTGCGGCAT
TAATTCTGTTATGGATCCAAATGCTTACAAATTCTGTGGGAATTGCATGACCACATAAAG
CACTTTTTTAAAATGGTGTGCTGTCATCTACTGCTTGCAGACCTGAACTAAAGTCATTTA
CTATGACTACATAGCCCACTCCTTTCAGGCACAAATGGTACAGCTGGCATCTCCTTTTCA
GTTCATGATTAAATAAATATCCTCATTCTCTAAACAGAACCTAGAATGAATATACTGGAC
TTTCTTAGGTCTTTGACTATGAATGGAAAACATAAGCAAAGGATATTATAAAACAATCAC
TGAAATCTGCCAATCTGTTGCTATTTTACCTGATGGACATATTGGGCCCCCTCCAATTCT
AATAAGTTTCCCAGCTAACCCTCAAATACAATCTCTCCTTTCAGCAGGATTAAGGTGGGA
GTATGTGTCAGATCTGGAGAACGTTTAAAGCAGCTTAATGGGGTGCAGTGATCAAATGAA
GGAATATAGTCCCTGAAGAACTTTGTTGGAGAATGCTACTCATTATCAGTTGTGCACTGG
AAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGTAAGTATGTGTCGTCTTAGTTTTGTTTGGTTTGGTTTTTTTCATTTAGTTTGAGT
CTGTTCATTTGGTGTGTTTTCTACCTCTGGTCTTATTTGTGGTACATAATTTCAAATAAA
CACTCATACGAAAACAGAAATTTCATAGAAGTAATAATAAGGTGAACCAGTAAATACTTT
TTATTTTTTCAGCCATTTCAGTTAACCCTGCAATTAAAGAATGTCCAAATAAATCTTCAT
TTGCGGAATTTCTTATTCTCATAAATCAAATATCTGACAACTTGCCCTTGTGTGCGGCAT
TAATTCTGTTATGGATCCAAATGCTTACAAATTCTGTGGGAATTGCATGACCACATAAAG
CACTTTTTTAAAATGGTGTGCTGTCATCTACTGCTTGCAGACCTGAACTAAAGTCATTTA
CTATGACTACATAGCCCACTCCTTTCAGGCACAAATGGTACAGCTGGCATCTCCTTTTCA
GTTCATGATTAAATAAATATCCTCATTCTCTAAACAGAACCTAGAATGAATATACTGGAC
TTTCTTAGGTCTTTGACTATGAATGGAAAACATAAGCAAAGGATATTATAAAACAATCAC
TGAAATCTGCCAATCTGTTGCTATTTTACCTGATGGACATATTGGGCCCCCTCCAATTCT
AATAAGTTTCCCAGCTAACCCTCAAATACAATCTCTCCTTTCAGCAGGATTAAGGTGGGA
GTATGTGTCAGATCTGGAGAACGTTTAAAGCAGCTTAATGGGGTGCAGTGATCAAATGAA
GGAATATAGTCCCTGAAGAACTTTGTTGGAGAATGCTACTCATTATCAGTTGTGCACTGG
AAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               336-446, - strand, RNAz p=0.51896

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-446, - strand, RNAz p=0.51896

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-845, gnl|bosTau2|chr9 (35276435-35275585)
               

               
               1-845, gnl|Hg17|chr6 (87782971-87784131)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-845, gnl|bosTau2|chr9 (35276435-35275585)
               

               
               1-845, gnl|Hg17|chr6 (87782971-87784131)

	1-845, gnl\|bosTau2\|chr9 (35276435-35275585)
	1-845, gnl\|Hg17\|chr6 (87782971-87784131)