Non-Coding RNA Search

Pig4-TMW8066P04

Sequence:


               
               TTCAAGTCCAGAAAAAAAAAGTGGATAATCCACTCTGCTGACTTTCAAGATTATTATATT
ATTCAATTCTCAGGAATGTTGCAGAGTGGTTACCCAGTCCATGAGAACCTATGTCCTTAT
TAGGTGGAATATTTGGATAAGAACCAGACATCGCTGATCTAATATACAAATCCTTCCCCC
ACCCCCCAATTTGCAGAAAAGAAAAAGCAGGACCAATTGAAATAATTAGGAAAATGATGA
ATCTTCAGGAAAGGGAATGATGGTTTGTTGTTCTTCTTTCCTAAACTAGTGACCCCTTCA
AAGGGGCTGGTCTGGCCAAAGTGTTAAATAAAACATAAGATTTCTTCATTATTCAGATTG
TGGTCATGTATATTTAAAATTGATATCTAGTTGCCCTCATGAAGAGTTGGAAATTGATTT
GTGTTTTAACTTTTACCTCACCTGGCAGCCTAAAGCTCAGAAGGACTCCATTTTCTAACT
TTGCCCCCAACACAGCAAAAGCATGCCCGTCGTGCTTTCTCTCCACCCCGATCTCTGTTC
CATCAGCTTGCTTTTCTTTCCAAGGTTATATATTTGAACACTTTTCTCCAAATGTTAAAC
CTATTTAGGATAATAAATATCAAAGCTCTGGTACTTCATTCTATAGAGTCCATCCTGTAA
GAGAAAATGGAACATTTGTACAGCCGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAAGTCCAGAAAAAAAAAGTGGATAATCCACTCTGCTGACTTTCAAGATTATTATATT
ATTCAATTCTCAGGAATGTTGCAGAGTGGTTACCCAGTCCATGAGAACCTATGTCCTTAT
TAGGTGGAATATTTGGATAAGAACCAGACATCGCTGATCTAATATACAAATCCTTCCCCC
ACCCCCCAATTTGCAGAAAAGAAAAAGCAGGACCAATTGAAATAATTAGGAAAATGATGA
ATCTTCAGGAAAGGGAATGATGGTTTGTTGTTCTTCTTTCCTAAACTAGTGACCCCTTCA
AAGGGGCTGGTCTGGCCAAAGTGTTAAATAAAACATAAGATTTCTTCATTATTCAGATTG
TGGTCATGTATATTTAAAATTGATATCTAGTTGCCCTCATGAAGAGTTGGAAATTGATTT
GTGTTTTAACTTTTACCTCACCTGGCAGCCTAAAGCTCAGAAGGACTCCATTTTCTAACT
TTGCCCCCAACACAGCAAAAGCATGCCCGTCGTGCTTTCTCTCCACCCCGATCTCTGTTC
CATCAGCTTGCTTTTCTTTCCAAGGTTATATATTTGAACACTTTTCTCCAAATGTTAAAC
CTATTTAGGATAATAAATATCAAAGCTCTGGTACTTCATTCTATAGAGTCCATCCTGTAA
GAGAAAATGGAACATTTGTACAGCCGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-115, + strand, RNAz p=0.977418

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, + strand, RNAz p=0.977418

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               27-99, + strand, RNAmicro p=0.999789

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               27-99, + strand, RNAmicro p=0.999789

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-683, gnl|bosTau2|chr13 (32142949-32143623)
               

               
               1-683, gnl|Hg17|chr20 (6708256-6708943)
               

               
               1-683, gnl|Mm7|chr2 (133303094-133303763)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-683, gnl|bosTau2|chr13 (32142949-32143623)
               

               
               1-683, gnl|Hg17|chr20 (6708256-6708943)
               

               
               1-683, gnl|Mm7|chr2 (133303094-133303763)

	1-683, gnl\|bosTau2\|chr13 (32142949-32143623)
	1-683, gnl\|Hg17\|chr20 (6708256-6708943)
	1-683, gnl\|Mm7\|chr2 (133303094-133303763)