Non-Coding RNA Search

Pig4-TMW8067D12

Sequence:


               
               TTTCATTATTTATTTTTTTTATTTTTTATTATAGTTGATTTACAATGTTCTGTTAAGGAG
TTCGGTAAGTTTAAAATGTCTTTGCTGATTGTCCACAAGTCTCAGCCTTGGGCCAGGCCT
GAAGAGACCCAGTTTGGAGGGAACAACTGTGGGATCAGGGATGAGCCAGAGGGGAAGGAC
AAAGACCGAAGGAGGTCAGAGGGAGATCAGGGAGGGCGTCCTGAAAGAGGAGGCACTTGA
GAGATGGATAGGGATTCAGAAGGAGAAAAGGCATAGGAACAGTGTGTGCCGCCACCCAGA
GGCCGAGACCCTGACGGGGGGTGCGTCTGTAATGGACCAGGAACGGGACCTGCTCAAGAC
ATTTCAGATCCCAGCAGACACGCTTGTCACCTACCTACTGACACTGGAGGGTCACTACCA
CAACGACGTGGCCTACCACAACAGCCTACACGCCGCCGACGTGGCCCAGTCCACACATGT
GCTGCTGGGCACACCTGCACTTGAGGTAGGGCCCTACAGCTACAAGCTGTCCTGGTGGGT
GCAGGGTGCAGAGAACCTGCCCCTCACTTTTTATGCTCCGTGCCCACTCAGGCCGTGTTC
ACAGACCTGGAAGTCCTGGCTGCCATCTTTGCAAGCGCCATCCATGATGTGGACCATCCT
GGGGTCTCCAATCAGTTTCTCATTAACACCAGTGAGTTAGAGGGCTGGGCCCAGCCACCA
CCTGTCAATCAAGTGACCTTAGGTGGTCCCATCCCTGTTCTGAGTCTCCCTGTTTGTGAA
ATAGCTGCTACACTCTTCCCTCCCTAAGGTGCTCAGAGCAGGTCCAGGTACACACAGTAA
AAACTCAATAAATGAGAGAACTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCATTATTTATTTTTTTTATTTTTTATTATAGTTGATTTACAATGTTCTGTTAAGGAG
TTCGGTAAGTTTAAAATGTCTTTGCTGATTGTCCACAAGTCTCAGCCTTGGGCCAGGCCT
GAAGAGACCCAGTTTGGAGGGAACAACTGTGGGATCAGGGATGAGCCAGAGGGGAAGGAC
AAAGACCGAAGGAGGTCAGAGGGAGATCAGGGAGGGCGTCCTGAAAGAGGAGGCACTTGA
GAGATGGATAGGGATTCAGAAGGAGAAAAGGCATAGGAACAGTGTGTGCCGCCACCCAGA
GGCCGAGACCCTGACGGGGGGTGCGTCTGTAATGGACCAGGAACGGGACCTGCTCAAGAC
ATTTCAGATCCCAGCAGACACGCTTGTCACCTACCTACTGACACTGGAGGGTCACTACCA
CAACGACGTGGCCTACCACAACAGCCTACACGCCGCCGACGTGGCCCAGTCCACACATGT
GCTGCTGGGCACACCTGCACTTGAGGTAGGGCCCTACAGCTACAAGCTGTCCTGGTGGGT
GCAGGGTGCAGAGAACCTGCCCCTCACTTTTTATGCTCCGTGCCCACTCAGGCCGTGTTC
ACAGACCTGGAAGTCCTGGCTGCCATCTTTGCAAGCGCCATCCATGATGTGGACCATCCT
GGGGTCTCCAATCAGTTTCTCATTAACACCAGTGAGTTAGAGGGCTGGGCCCAGCCACCA
CCTGTCAATCAAGTGACCTTAGGTGGTCCCATCCCTGTTCTGAGTCTCCCTGTTTGTGAA
ATAGCTGCTACACTCTTCCCTCCCTAAGGTGCTCAGAGCAGGTCCAGGTACACACAGTAA
AAACTCAATAAATGAGAGAACTAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               391-510, - strand, RNAz p=0.719248

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-510, - strand, RNAz p=0.719248

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               56-546, gnl|bosTau2|chr7 (4221203-4221689)
               

               
               56-546, gnl|Hg17|chr19 (18190603-18190117)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-546, gnl|bosTau2|chr7 (4221203-4221689)
               

               
               56-546, gnl|Hg17|chr19 (18190603-18190117)

	56-546, gnl\|bosTau2\|chr7 (4221203-4221689)
	56-546, gnl\|Hg17\|chr19 (18190603-18190117)