Non-Coding RNA Search

Pig4-TMW8067G03

Sequence:


               
               AAGAGGAGGCGGAAGTGAGATGCAACCCAGAGCAGCAGCCCGTGCCTTGGAGGGAGGAAG
AGGCTGAGGGTGTCGGGATGCAGAAGACGCTCAGATGAAGTGAGGTCCAAGCAGGAGAGC
AGGGCAAGGCTTTGGGTCTGGGCAGGGAGGTAAAGGAGCAGCCCAGGGGCACTGATTTCA
GCTCGGTCTCCCTATGCTACACAGGCCTGGAGTCAGTGGTGAGCTCCCCGTCAGGGCAAA
TGTGGGCATCAGGGCTGGGTGTGCCCCTTTTGTGAAGATGCCCTGGAGAGAGAGGATTCT
GATGTTGGGATTGAGGGCTTGGCCCTGTCTTGAAAATCAGGAGCTGAAGAGCTCAGGGCC
CAGTTATCTGTGGGAACATTGGCTCCCCGATGCCCCTCTGAGCCAGCCCATTGCTGGGTG
CCATGCGGAATGAAGATCAGCAGTCAGAGGCAGGCTCTGGACCAAAGGAACTCCCACCAC
GACCTGAGAGGCTGGTGGATGTGAACATTTCCATGAATGAGGGAAGTATGTGCTGGAGGT
TGGGGAGGATCATCTGAGCTGGGTGTTGAAGGGTCCATAGTGAGAGATGGGACCAGTGTT
CCCATCAGAGGGAACAGCATGAGCAAAGGCTTAGCGACTTGCTGGCAGATGTGTCTGCGT
GTGCATATGGGGAGACTGGTAAGATGCCCTGCTGGGGAAAGCAGTGGTCAGGGGTGCTTT
AGGCCTTGAATGGTGGGAGTTTGAATTCTGTCCTGGACAAGGCAGAGACAGTGGGGGAAA
AA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGGAGGCGGAAGTGAGATGCAACCCAGAGCAGCAGCCCGTGCCTTGGAGGGAGGAAG
AGGCTGAGGGTGTCGGGATGCAGAAGACGCTCAGATGAAGTGAGGTCCAAGCAGGAGAGC
AGGGCAAGGCTTTGGGTCTGGGCAGGGAGGTAAAGGAGCAGCCCAGGGGCACTGATTTCA
GCTCGGTCTCCCTATGCTACACAGGCCTGGAGTCAGTGGTGAGCTCCCCGTCAGGGCAAA
TGTGGGCATCAGGGCTGGGTGTGCCCCTTTTGTGAAGATGCCCTGGAGAGAGAGGATTCT
GATGTTGGGATTGAGGGCTTGGCCCTGTCTTGAAAATCAGGAGCTGAAGAGCTCAGGGCC
CAGTTATCTGTGGGAACATTGGCTCCCCGATGCCCCTCTGAGCCAGCCCATTGCTGGGTG
CCATGCGGAATGAAGATCAGCAGTCAGAGGCAGGCTCTGGACCAAAGGAACTCCCACCAC
GACCTGAGAGGCTGGTGGATGTGAACATTTCCATGAATGAGGGAAGTATGTGCTGGAGGT
TGGGGAGGATCATCTGAGCTGGGTGTTGAAGGGTCCATAGTGAGAGATGGGACCAGTGTT
CCCATCAGAGGGAACAGCATGAGCAAAGGCTTAGCGACTTGCTGGCAGATGTGTCTGCGT
GTGCATATGGGGAGACTGGTAAGATGCCCTGCTGGGGAAAGCAGTGGTCAGGGGTGCTTT
AGGCCTTGAATGGTGGGAGTTTGAATTCTGTCCTGGACAAGGCAGAGACAGTGGGGGAAA
AA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               236-350, - strand, RNAz p=0.964563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-350, - strand, RNAz p=0.964563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-645, gnl|bosTau2|chr2 (71803879-71804566)
               

               
               1-645, gnl|Hg17|chr1 (33422905-33424026)
               

               
               1-645, gnl|Mm7|chr4 (128223480-128222809)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-645, gnl|bosTau2|chr2 (71803879-71804566)
               

               
               1-645, gnl|Hg17|chr1 (33422905-33424026)
               

               
               1-645, gnl|Mm7|chr4 (128223480-128222809)

	1-645, gnl\|bosTau2\|chr2 (71803879-71804566)
	1-645, gnl\|Hg17\|chr1 (33422905-33424026)
	1-645, gnl\|Mm7\|chr4 (128223480-128222809)