Non-Coding RNA Search

Pig4-TMW8067H05

Sequence:


               
               CCCACAAGCCAGTGTAATAAGCCCTGGGAGGGTCAGCTGGGAGAATGTGCCCAGTGGCTC
AAGTGGACAGGTGAGGAGGTGGGTGATGCAGCAGGGGAGATCATTACTGCCTCTCAACAT
GGGGAAATGATATTTGTCAGTGGGGAGGCAGTGTCTGCTTACTCTTCAGCAATGAAGCTG
AAAAGTGTTTATCGTGCTCTACTTCTCTTAAATTCTCAAACTCTGCTAGTTGTTGACCAT
GTCGAGAGGCAAAACAGTTCCCCAATAAAATCTGTCAGTGCCTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACAAGCCAGTGTAATAAGCCCTGGGAGGGTCAGCTGGGAGAATGTGCCCAGTGGCTC
AAGTGGACAGGTGAGGAGGTGGGTGATGCAGCAGGGGAGATCATTACTGCCTCTCAACAT
GGGGAAATGATATTTGTCAGTGGGGAGGCAGTGTCTGCTTACTCTTCAGCAATGAAGCTG
AAAAGTGTTTATCGTGCTCTACTTCTCTTAAATTCTCAAACTCTGCTAGTTGTTGACCAT
GTCGAGAGGCAAAACAGTTCCCCAATAAAATCTGTCAGTGCCTCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               81-200, + strand, RNAz p=0.871298

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, + strand, RNAz p=0.871298

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-283, gnl|bosTau2|chr24 (9453777-9453495)
               

               
               1-283, gnl|canFam2|chr1 (13350061-13349311)
               

               
               1-283, gnl|danRer3|chr2 (18771575-18772325)
               

               
               1-283, gnl|dasNov1|scaffold_7534 (76653-77403)
               

               
               1-283, gnl|echTel1|scaffold_304768 (865-121)
               

               
               1-283, gnl|fr1|chrUn (100925645-100926395)
               

               
               1-283, gnl|galGal2|chr2 (94538938-94538188)
               

               
               1-283, gnl|hg17|chr18 (63330898-63331648)
               

               
               1-283, gnl|Hg17|chr18 (63331307-63331025)
               

               
               1-283, gnl|loxAfr1|scaffold_14257 (45866-45115)
               

               
               1-283, gnl|mm7|chr1 (111759985-111760735)
               

               
               1-283, gnl|Mm7|chr1 (111760394-111760112)
               

               
               1-283, gnl|monDom2|scaffold_21 (10321603-10320853)
               

               
               1-283, gnl|oryCun1|scaffold_199709 (24056-23306)
               

               
               1-283, gnl|panTro1|chr17 (60274034-60274784)
               

               
               1-283, gnl|rheMac2|chr18 (61071553-61072303)
               

               
               1-283, gnl|rn3|chr13 (19399310-19398560)
               

               
               1-283, gnl|tetNig1|chr6 (5225356-5224606)
               

               
               1-283, gnl|xenTro1|scaffold_565 (378751-379501)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-283, gnl|bosTau2|chr24 (9453777-9453495)
               

               
               1-283, gnl|canFam2|chr1 (13350061-13349311)
               

               
               1-283, gnl|danRer3|chr2 (18771575-18772325)
               

               
               1-283, gnl|dasNov1|scaffold_7534 (76653-77403)
               

               
               1-283, gnl|echTel1|scaffold_304768 (865-121)
               

               
               1-283, gnl|fr1|chrUn (100925645-100926395)
               

               
               1-283, gnl|galGal2|chr2 (94538938-94538188)
               

               
               1-283, gnl|hg17|chr18 (63330898-63331648)
               

               
               1-283, gnl|Hg17|chr18 (63331307-63331025)
               

               
               1-283, gnl|loxAfr1|scaffold_14257 (45866-45115)
               

               
               1-283, gnl|mm7|chr1 (111759985-111760735)
               

               
               1-283, gnl|Mm7|chr1 (111760394-111760112)
               

               
               1-283, gnl|monDom2|scaffold_21 (10321603-10320853)
               

               
               1-283, gnl|oryCun1|scaffold_199709 (24056-23306)
               

               
               1-283, gnl|panTro1|chr17 (60274034-60274784)
               

               
               1-283, gnl|rheMac2|chr18 (61071553-61072303)
               

               
               1-283, gnl|rn3|chr13 (19399310-19398560)
               

               
               1-283, gnl|tetNig1|chr6 (5225356-5224606)
               

               
               1-283, gnl|xenTro1|scaffold_565 (378751-379501)

	1-283, gnl\|bosTau2\|chr24 (9453777-9453495)
	1-283, gnl\|canFam2\|chr1 (13350061-13349311)
	1-283, gnl\|danRer3\|chr2 (18771575-18772325)
	1-283, gnl\|dasNov1\|scaffold_7534 (76653-77403)
	1-283, gnl\|echTel1\|scaffold_304768 (865-121)
	1-283, gnl\|fr1\|chrUn (100925645-100926395)
	1-283, gnl\|galGal2\|chr2 (94538938-94538188)
	1-283, gnl\|hg17\|chr18 (63330898-63331648)
	1-283, gnl\|Hg17\|chr18 (63331307-63331025)
	1-283, gnl\|loxAfr1\|scaffold_14257 (45866-45115)
	1-283, gnl\|mm7\|chr1 (111759985-111760735)
	1-283, gnl\|Mm7\|chr1 (111760394-111760112)
	1-283, gnl\|monDom2\|scaffold_21 (10321603-10320853)
	1-283, gnl\|oryCun1\|scaffold_199709 (24056-23306)
	1-283, gnl\|panTro1\|chr17 (60274034-60274784)
	1-283, gnl\|rheMac2\|chr18 (61071553-61072303)
	1-283, gnl\|rn3\|chr13 (19399310-19398560)
	1-283, gnl\|tetNig1\|chr6 (5225356-5224606)
	1-283, gnl\|xenTro1\|scaffold_565 (378751-379501)