Non-Coding RNA Search

Pig4-TMW8067O09

Sequence:


               
               AGAGGTTGAGCCCACCTTGCAGGAACCCAGAAACATAGAAGAGAAGCAAAAACAGCATTT
TAGGAGAAAAGTAGCCAAATTGGAATCCATTCTTCTTTAGGGCAGACTCTTATGCCCTAG
CAGGTGTAAAATGGAAAAGAATTCTCAATGCTTCATCCCTCTGAAAGCAGAGAAACTCGG
GGCCTATTTAGCATCAGCTAAAGGAATCTCTGTTACTCTGTATTGGTACTAATGTTTACA
AGAATACAATATACTGTGATGCCTTCCTCCTCAAGCCTCTTCCTAGTATACGAACTTGCT
TCCTATTAGTCATTAATACGGTTAAACTTCAATTCACAATGACCTTGGAATTAATGTCAG
TTTGGTTTATTTTGTTACAGAGCAATAAAATCATTAGAACAATTGGTTTTTTAAAAAGAC
CTACATGGATGCATCCTGTGCATGTAAGGATTATTTCCCAAACCAAAGGATCATTCATCT
CCATTTATTTATTTTTTTGTTGTTGTTGTTGTTACTGCTCAGTGTGAAGTCAGGAGCTGA
GACAGGATGGCTGCTGGTTTCACAGTAGTTTGGATGCCTTACTCTCATTTTAAAGCCAGC
ATCCAGAATTTCCTCCCTCTCTGGTACAACAGGCAGAACTGAGTGTACAAGTTAAGATGG
ATTCTTTGATCAAGCATGGATGGTATGACTGCCGTTCCATAAAATGGAATGCCTCTAATT
CAATATTCCATTTAATAAAGATAATACAGTGGCTGAAAGGAGTCTAGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGTTGAGCCCACCTTGCAGGAACCCAGAAACATAGAAGAGAAGCAAAAACAGCATTT
TAGGAGAAAAGTAGCCAAATTGGAATCCATTCTTCTTTAGGGCAGACTCTTATGCCCTAG
CAGGTGTAAAATGGAAAAGAATTCTCAATGCTTCATCCCTCTGAAAGCAGAGAAACTCGG
GGCCTATTTAGCATCAGCTAAAGGAATCTCTGTTACTCTGTATTGGTACTAATGTTTACA
AGAATACAATATACTGTGATGCCTTCCTCCTCAAGCCTCTTCCTAGTATACGAACTTGCT
TCCTATTAGTCATTAATACGGTTAAACTTCAATTCACAATGACCTTGGAATTAATGTCAG
TTTGGTTTATTTTGTTACAGAGCAATAAAATCATTAGAACAATTGGTTTTTTAAAAAGAC
CTACATGGATGCATCCTGTGCATGTAAGGATTATTTCCCAAACCAAAGGATCATTCATCT
CCATTTATTTATTTTTTTGTTGTTGTTGTTGTTACTGCTCAGTGTGAAGTCAGGAGCTGA
GACAGGATGGCTGCTGGTTTCACAGTAGTTTGGATGCCTTACTCTCATTTTAAAGCCAGC
ATCCAGAATTTCCTCCCTCTCTGGTACAACAGGCAGAACTGAGTGTACAAGTTAAGATGG
ATTCTTTGATCAAGCATGGATGGTATGACTGCCGTTCCATAAAATGGAATGCCTCTAATT
CAATATTCCATTTAATAAAGATAATACAGTGGCTGAAAGGAGTCTAGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               520-629, - strand, RNAz p=0.978604

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               520-629, - strand, RNAz p=0.978604

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-771, gnl|bosTau2|chr22 (8031302-8032053)
               

               
               2-771, gnl|Hg17|chr3 (36563732-36564503)
               

               
               2-771, gnl|Mm7|chr9 (111259508-111258529)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-771, gnl|bosTau2|chr22 (8031302-8032053)
               

               
               2-771, gnl|Hg17|chr3 (36563732-36564503)
               

               
               2-771, gnl|Mm7|chr9 (111259508-111258529)

	2-771, gnl\|bosTau2\|chr22 (8031302-8032053)
	2-771, gnl\|Hg17\|chr3 (36563732-36564503)
	2-771, gnl\|Mm7\|chr9 (111259508-111258529)