Non-Coding RNA Search

Pig4-TMW8067P02

Sequence:


               
               GAAGAGAGGAGGCAGGAAAGGATGAAGGATTAAGTATGAAGCAGTGGCTCCCTGAGGGCT
TTTTTTCTGGTTAAGTGGTAGAGCCAGAGGTAGTGCCGACTTTCTTGACCCCGTCCTGCC
CTGGATGTACCTGGGTCACTCACCTGGGCTCGGGTGCTGCTTTGGATGCCTTTCCCGCCG
GTGGAGCAGAGGCCACGGCCACAAGGGGGCAGCAGAGAGCGCGGCAGTCTCTGCCGCCTG
CCGCCTTTGGGGCGGTGGTGATGAACTAAAGTAGGGACGGTTGCCGGTCCCGCCTCCACC
ACCTGCACGTGTCTTGCTATTGTTAGGGTTCAGGCTCACTGTCACCAGCTCATGGCACCA
CCTCTCTGACCTTGGTGTGGTTGGGCTCCTTCATGGCTGTGGTCAGGAATTGGGGAGAAG
GAGCCCTGACTCCCTGTGTGCCTGCCCCTTCTATTTCGCTAGTATTGGTGGAATAACATT
GATCCCTTGTAAGAATTATTCTAGACAGGACATGTTTATGTGCTTTCACAGGGAGGCCTT
CCCTGAGTTCTGTGTCTAAAATGGCCATCCTCCACACTCCTGACCCTACTGCTCCTCCAC
ACCCCCCGCCCACTTCTCTGTTTTTCTGCACAATACCTGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGAGGAGGCAGGAAAGGATGAAGGATTAAGTATGAAGCAGTGGCTCCCTGAGGGCT
TTTTTTCTGGTTAAGTGGTAGAGCCAGAGGTAGTGCCGACTTTCTTGACCCCGTCCTGCC
CTGGATGTACCTGGGTCACTCACCTGGGCTCGGGTGCTGCTTTGGATGCCTTTCCCGCCG
GTGGAGCAGAGGCCACGGCCACAAGGGGGCAGCAGAGAGCGCGGCAGTCTCTGCCGCCTG
CCGCCTTTGGGGCGGTGGTGATGAACTAAAGTAGGGACGGTTGCCGGTCCCGCCTCCACC
ACCTGCACGTGTCTTGCTATTGTTAGGGTTCAGGCTCACTGTCACCAGCTCATGGCACCA
CCTCTCTGACCTTGGTGTGGTTGGGCTCCTTCATGGCTGTGGTCAGGAATTGGGGAGAAG
GAGCCCTGACTCCCTGTGTGCCTGCCCCTTCTATTTCGCTAGTATTGGTGGAATAACATT
GATCCCTTGTAAGAATTATTCTAGACAGGACATGTTTATGTGCTTTCACAGGGAGGCCTT
CCCTGAGTTCTGTGTCTAAAATGGCCATCCTCCACACTCCTGACCCTACTGCTCCTCCAC
ACCCCCCGCCCACTTCTCTGTTTTTCTGCACAATACCTGCAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               452-570, - strand, RNAz p=0.610512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               452-570, - strand, RNAz p=0.610512

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-586, gnl|bosTau2|chr7 (7335592-7335046)
               

               
               22-586, gnl|canFam2|chr20 (51105399-51104837)
               

               
               22-586, gnl|hg17|chr19 (14528251-14528872)
               

               
               22-586, gnl|mm7|chr8 (82157684-82157182)
               

               
               22-586, gnl|panTro1|chr20 (15167562-15168179)
               

               
               22-586, gnl|rheMac2|chr19 (14269167-14269785)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-586, gnl|bosTau2|chr7 (7335592-7335046)
               

               
               22-586, gnl|canFam2|chr20 (51105399-51104837)
               

               
               22-586, gnl|hg17|chr19 (14528251-14528872)
               

               
               22-586, gnl|mm7|chr8 (82157684-82157182)
               

               
               22-586, gnl|panTro1|chr20 (15167562-15168179)
               

               
               22-586, gnl|rheMac2|chr19 (14269167-14269785)

	22-586, gnl\|bosTau2\|chr7 (7335592-7335046)
	22-586, gnl\|canFam2\|chr20 (51105399-51104837)
	22-586, gnl\|hg17\|chr19 (14528251-14528872)
	22-586, gnl\|mm7\|chr8 (82157684-82157182)
	22-586, gnl\|panTro1\|chr20 (15167562-15168179)
	22-586, gnl\|rheMac2\|chr19 (14269167-14269785)