Non-Coding RNA Search

Pig4-TMW8068E13

Sequence:


               
               TACACCACCTCCTATGGCTTGTCAGAAGATGGCAAATGGTTTTGCGACAACTGAAGAGCT
GGCTGGAAAAGCTGGAGTGTTAGTGAGCCAAGAAGTTACCAAAAGTCTGGGACCTAAACC
ATTTCAGCTGCCGTTCAGACCACAGGATGACTTGTTAGCCAGAGCGATTGCTCAAGGCCC
AAAGACAGTGGATGTTCCAGCTTCACTCCCAACACCACCTCATAACAATCAGGAGGAATT
AAGGATCCAGGACCACGGTGGTGGTCGGGACACCCCTGACAGCTTTGTTCCTTCATCCTC
TCCGGAGAGCGTGGTCGGGATGGAAGTCAGCAGGTACCCGGATCTGTCACTGGTCAAAGA
GGAGCCTCCGGAGCCGGTGCCATCCCCCATCATCCCGATCCTTCCCAGCCATCCCGGGAA
AGGTTTGGAATCTAGAAGGAATGACATCAAAACTGAACCAGGCACTTTATTTTTCACATC
ACCGTTTGGTTCCTCCCCAAATGGTCCCAGATCGGGTCTCATATCTGTGGCAATTACTCT
GCATCCGACAGCTGCTGAGAACATTAGCAGTGTTGTGGCTGCGTTTTCCGACCTTCTCCA
CGTCCGAATTCCTAACAGCTATGAGGTTAGTAATGCCCCAGATGGTCCATCCGTGGGTGT
GGTCAGTAGCCACAGAGTAAACCCAGGTTTGGAGTATCGACAGCGCTTATTTCTTCGTGG
GCCTCCACCAGGACCTGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACACCACCTCCTATGGCTTGTCAGAAGATGGCAAATGGTTTTGCGACAACTGAAGAGCT
GGCTGGAAAAGCTGGAGTGTTAGTGAGCCAAGAAGTTACCAAAAGTCTGGGACCTAAACC
ATTTCAGCTGCCGTTCAGACCACAGGATGACTTGTTAGCCAGAGCGATTGCTCAAGGCCC
AAAGACAGTGGATGTTCCAGCTTCACTCCCAACACCACCTCATAACAATCAGGAGGAATT
AAGGATCCAGGACCACGGTGGTGGTCGGGACACCCCTGACAGCTTTGTTCCTTCATCCTC
TCCGGAGAGCGTGGTCGGGATGGAAGTCAGCAGGTACCCGGATCTGTCACTGGTCAAAGA
GGAGCCTCCGGAGCCGGTGCCATCCCCCATCATCCCGATCCTTCCCAGCCATCCCGGGAA
AGGTTTGGAATCTAGAAGGAATGACATCAAAACTGAACCAGGCACTTTATTTTTCACATC
ACCGTTTGGTTCCTCCCCAAATGGTCCCAGATCGGGTCTCATATCTGTGGCAATTACTCT
GCATCCGACAGCTGCTGAGAACATTAGCAGTGTTGTGGCTGCGTTTTCCGACCTTCTCCA
CGTCCGAATTCCTAACAGCTATGAGGTTAGTAATGCCCCAGATGGTCCATCCGTGGGTGT
GGTCAGTAGCCACAGAGTAAACCCAGGTTTGGAGTATCGACAGCGCTTATTTCTTCGTGG
GCCTCCACCAGGACCTGCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61874312|ref|XP_614835.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874312|ref|XP_614835.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               621-738, + strand, RNAz p=0.83125

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               621-738, + strand, RNAz p=0.83125

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY024361, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY024361, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               242-424, gnl|bosTau2|chr4 (64767358-64767540)
               

               
               242-424, gnl|Hg17|chr7 (151289180-151288998)
               

               
               242-424, gnl|Mm7|chr5 (24331382-24331200)
               


               
               558-738, gnl|bosTau2|chr4 (64769232-64769412)
               

               
               558-738, gnl|Hg17|chr7 (151287689-151287509)
               

               
               558-738, gnl|Mm7|chr5 (24329734-24329554)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               242-424, gnl|bosTau2|chr4 (64767358-64767540)
               

               
               242-424, gnl|Hg17|chr7 (151289180-151288998)
               

               
               242-424, gnl|Mm7|chr5 (24331382-24331200)
               


               
               558-738, gnl|bosTau2|chr4 (64769232-64769412)
               

               
               558-738, gnl|Hg17|chr7 (151287689-151287509)
               

               
               558-738, gnl|Mm7|chr5 (24329734-24329554)

	242-424, gnl\|bosTau2\|chr4 (64767358-64767540)
	242-424, gnl\|Hg17\|chr7 (151289180-151288998)
	242-424, gnl\|Mm7\|chr5 (24331382-24331200)

	558-738, gnl\|bosTau2\|chr4 (64769232-64769412)
	558-738, gnl\|Hg17\|chr7 (151287689-151287509)
	558-738, gnl\|Mm7\|chr5 (24329734-24329554)