Non-Coding RNA Search

Pig4-TMW8068K23

Sequence:


               
               GATTTGTTTCATTCGGAGGTCAGCTTTTTTAGCAGGTGGTGGACAGAGGGAGCAAGCAGC
AGCTGTCTGGATACAGGGTCCAGAAAATCCTTTGAAAATTCACTGTCTCCATAACTCCTT
TAATCATGCTGTCTGCTGCTCCCACCCTTGAGAGTTTTTGCAGTAGTGGGAAGAAGGTCT
CTGTGTACAGAAACGTTAGCGACACAGGTTCTAGAAGAGTTGTGTCCACTGTAGCCTTTT
AGGTTGTATCGCCTTTTTTTTTTTTTAAACTCTGGAGAGAAAAGCAAAGCCTGGTTTTCA
CTTCTAATGAACATTTCAGTAGAACGGTTTTTTCCAAGCGTCATGTTTTTGCCAAAATAA
AATAATTGGCTCTTTTGAAAAAATGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTGTTTCATTCGGAGGTCAGCTTTTTTAGCAGGTGGTGGACAGAGGGAGCAAGCAGC
AGCTGTCTGGATACAGGGTCCAGAAAATCCTTTGAAAATTCACTGTCTCCATAACTCCTT
TAATCATGCTGTCTGCTGCTCCCACCCTTGAGAGTTTTTGCAGTAGTGGGAAGAAGGTCT
CTGTGTACAGAAACGTTAGCGACACAGGTTCTAGAAGAGTTGTGTCCACTGTAGCCTTTT
AGGTTGTATCGCCTTTTTTTTTTTTTAAACTCTGGAGAGAAAAGCAAAGCCTGGTTTTCA
CTTCTAATGAACATTTCAGTAGAACGGTTTTTTCCAAGCGTCATGTTTTTGCCAAAATAA
AATAATTGGCTCTTTTGAAAAAATGGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               43-153, - strand, RNAz p=0.853694

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-153, - strand, RNAz p=0.853694

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               3-362, gnl|bosTau2|chr12 (45243074-45242699)
               

               
               3-362, gnl|canFam2|chr22 (58556793-58557223)
               

               
               3-362, gnl|dasNov1|scaffold_1477 (61158-61560)
               

               
               3-362, gnl|echTel1|scaffold_155744 (4840-5249)
               

               
               3-362, gnl|hg17|chr13 (105982304-105982724)
               

               
               3-362, gnl|Hg17|chr13 (105982704-105982308)
               

               
               3-362, gnl|loxAfr1|scaffold_260 (65432-65828)
               

               
               3-362, gnl|mm7|chr8 (8627762-8628146)
               

               
               3-362, gnl|monDom2|scaffold_11 (42533692-42533254)
               

               
               3-362, gnl|oryCun1|scaffold_205774 (24663-24253)
               

               
               3-362, gnl|panTro1|chr14 (89384354-89384764)
               

               
               3-362, gnl|rheMac2|chr17 (86723298-86723727)
               

               
               3-362, gnl|rn3|chr16 (86176471-86176108)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-362, gnl|bosTau2|chr12 (45243074-45242699)
               

               
               3-362, gnl|canFam2|chr22 (58556793-58557223)
               

               
               3-362, gnl|dasNov1|scaffold_1477 (61158-61560)
               

               
               3-362, gnl|echTel1|scaffold_155744 (4840-5249)
               

               
               3-362, gnl|hg17|chr13 (105982304-105982724)
               

               
               3-362, gnl|Hg17|chr13 (105982704-105982308)
               

               
               3-362, gnl|loxAfr1|scaffold_260 (65432-65828)
               

               
               3-362, gnl|mm7|chr8 (8627762-8628146)
               

               
               3-362, gnl|monDom2|scaffold_11 (42533692-42533254)
               

               
               3-362, gnl|oryCun1|scaffold_205774 (24663-24253)
               

               
               3-362, gnl|panTro1|chr14 (89384354-89384764)
               

               
               3-362, gnl|rheMac2|chr17 (86723298-86723727)
               

               
               3-362, gnl|rn3|chr16 (86176471-86176108)

	3-362, gnl\|bosTau2\|chr12 (45243074-45242699)
	3-362, gnl\|canFam2\|chr22 (58556793-58557223)
	3-362, gnl\|dasNov1\|scaffold_1477 (61158-61560)
	3-362, gnl\|echTel1\|scaffold_155744 (4840-5249)
	3-362, gnl\|hg17\|chr13 (105982304-105982724)
	3-362, gnl\|Hg17\|chr13 (105982704-105982308)
	3-362, gnl\|loxAfr1\|scaffold_260 (65432-65828)
	3-362, gnl\|mm7\|chr8 (8627762-8628146)
	3-362, gnl\|monDom2\|scaffold_11 (42533692-42533254)
	3-362, gnl\|oryCun1\|scaffold_205774 (24663-24253)
	3-362, gnl\|panTro1\|chr14 (89384354-89384764)
	3-362, gnl\|rheMac2\|chr17 (86723298-86723727)
	3-362, gnl\|rn3\|chr16 (86176471-86176108)