Non-Coding RNA Search

Pig4-TMW8068N14

Sequence:


               
               CCTGGAAGCACTTACTCAGAACTGGTTCCAGCATCTGCACCGTCATGCATTCAGTGACCT
TCCTGTGCCACAAGACCCATTCCATGGCAATGACAGCTTTTCCCTTTTAAGTTATCAAAA
TGTCTGTTACTCTCTTTATTTTTTCTTCTTTCTGCATAATGGTGATGTTTGTCCTGGATT
GACTCTGTGACTGTTTAATCATCTGCAAAATGGCAATGAAAATGGTACCTGCTTCATAGA
ACTGCCAGAGGACTACATGAGCTAATACAAGCAAAGGGTTTATAGTAAGCATTTATTAAC
TAATTTGACAATTACGTGTCACTGTCATTTCTTGTTAGAGGAGAGGCAATGTTCTCACTC
CAGTATGAGACTGGCGGGGAAACCAGCTGTGTGTGTACGGAAGGTAGTTACACTGGGTTG
ACTAGGGTCCCCATCATCCAAATTCATGGCCTCCTGGAACCTGTGAATGTGAGCTTATTT
GTAAATAAGATCATGGAAAAGAGAATCAAGTTGAAAGGAGGTCATGCTGGACTAGGGTAT
TCCCTAATCCAACGACTGGTGTCCTTTTAAGAAGAGGGGAATTTTGACTCGGATAAAAGC
AAAAGAGAATCAGTCCCGCGAAGAGGGCGGCAGAGACTGGAGTTAAGTTGCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAAGCACTTACTCAGAACTGGTTCCAGCATCTGCACCGTCATGCATTCAGTGACCT
TCCTGTGCCACAAGACCCATTCCATGGCAATGACAGCTTTTCCCTTTTAAGTTATCAAAA
TGTCTGTTACTCTCTTTATTTTTTCTTCTTTCTGCATAATGGTGATGTTTGTCCTGGATT
GACTCTGTGACTGTTTAATCATCTGCAAAATGGCAATGAAAATGGTACCTGCTTCATAGA
ACTGCCAGAGGACTACATGAGCTAATACAAGCAAAGGGTTTATAGTAAGCATTTATTAAC
TAATTTGACAATTACGTGTCACTGTCATTTCTTGTTAGAGGAGAGGCAATGTTCTCACTC
CAGTATGAGACTGGCGGGGAAACCAGCTGTGTGTGTACGGAAGGTAGTTACACTGGGTTG
ACTAGGGTCCCCATCATCCAAATTCATGGCCTCCTGGAACCTGTGAATGTGAGCTTATTT
GTAAATAAGATCATGGAAAAGAGAATCAAGTTGAAAGGAGGTCATGCTGGACTAGGGTAT
TCCCTAATCCAACGACTGGTGTCCTTTTAAGAAGAGGGGAATTTTGACTCGGATAAAAGC
AAAAGAGAATCAGTCCCGCGAAGAGGGCGGCAGAGACTGGAGTTAAGTTGCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               429-624, + strand, RNAz p=0.99949

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-624, + strand, RNAz p=0.99949

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               526-583, + strand, RNAmicro p=0.93028

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               526-583, + strand, RNAmicro p=0.93028

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               4-656, gnl|bosTau2|chr5 (27366887-27367532)
               

               
               4-656, gnl|Hg17|chr12 (66865497-66864950)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-656, gnl|bosTau2|chr5 (27366887-27367532)
               

               
               4-656, gnl|Hg17|chr12 (66865497-66864950)

	4-656, gnl\|bosTau2\|chr5 (27366887-27367532)
	4-656, gnl\|Hg17\|chr12 (66865497-66864950)