Non-Coding RNA Search

Pig4-TMW8068N19

Sequence:


               
               GGAATTCATCCTTTCCCAAACATACACCACTAACCAGAGTCTCCTTCTGAGAATCATTCG
TGTCATTCCCACTTATTTTGAAGTTACTGGCTCTTCTGGGGTTTTTGAAAATCACAAATC
CACAGACTGTCAAGGTTTTGACGCCTCATCTAAGTAGGAATTACTGAAAATGCATTAAGC
CAGCGTGGCTTAGTGGAAAAACACCTGAAAGGCTACTTCCCATCCATCTCCATTTCATAA
TTTCTTTATCTCATAGAATCTCAGGTTCTTCATCTATAAAATGAGTCCTGAGATCTAGTT
CAACTCTTTAAATTCTCTCTCTCCTTTTTTAATCATTACTTTAAAATTACCTTTTTTTGG
AGTTCtgtggcacagcaggttaaggatccagccttatcactgcagtggctctggtcactg
ctgtggtgtggatttgatccccggcctgggaactgccacatggcttgggcacggccaaaa
a

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTCATCCTTTCCCAAACATACACCACTAACCAGAGTCTCCTTCTGAGAATCATTCG
TGTCATTCCCACTTATTTTGAAGTTACTGGCTCTTCTGGGGTTTTTGAAAATCACAAATC
CACAGACTGTCAAGGTTTTGACGCCTCATCTAAGTAGGAATTACTGAAAATGCATTAAGC
CAGCGTGGCTTAGTGGAAAAACACCTGAAAGGCTACTTCCCATCCATCTCCATTTCATAA
TTTCTTTATCTCATAGAATCTCAGGTTCTTCATCTATAAAATGAGTCCTGAGATCTAGTT
CAACTCTTTAAATTCTCTCTCTCCTTTTTTAATCATTACTTTAAAATTACCTTTTTTTGG
AGTTCtgtggcacagcaggttaaggatccagccttatcactgcagtggctctggtcactg
ctgtggtgtggatttgatccccggcctgggaactgccacatggcttgggcacggccaaaa
a

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-142, - strand, RNAz p=0.985591
               

               
               245-358, - strand, RNAz p=0.998958

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-142, - strand, RNAz p=0.985591
               

               
               245-358, - strand, RNAz p=0.998958

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-358, gnl|bosTau2|chr16 (51809125-51808767)
               

               
               2-358, gnl|Hg17|chr1 (210593782-210594141)
               

               
               2-358, gnl|Mm7|chr1 (189659156-189658482)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-358, gnl|bosTau2|chr16 (51809125-51808767)
               

               
               2-358, gnl|Hg17|chr1 (210593782-210594141)
               

               
               2-358, gnl|Mm7|chr1 (189659156-189658482)

	2-142, - strand, RNAz p=0.985591
	245-358, - strand, RNAz p=0.998958

	2-358, gnl\|bosTau2\|chr16 (51809125-51808767)
	2-358, gnl\|Hg17\|chr1 (210593782-210594141)
	2-358, gnl\|Mm7\|chr1 (189659156-189658482)