Non-Coding RNA Search

Pla1-C000001059_E08

Sequence:


               
               TTACtttattctttctgatgtgatagtgaatgggattattttcttaatttctctttctga
tcattcattgttgtatagaaatgtgagagatttatgtgtattaattttgtgtcttgtaac
tttactgaattcattgttgagctctactagttttcTGATAACTTCTTCAGGATTTTCTGT
GAATCATGTCATCTGCAGACAACAACTATTTTACTTCTTAAATAATACTTTTAATCTCAA
ATTTTAGAGAGGAGAAAACTAGGTCTTAGGAATGTTAATTTGCAAAGGCCACAACCTAGA
AACCAGAATTCAAATCTAGGCCCAGGTGATGACACAGCTCTTAAGAACAGTTTATATTAC
CATCAAATTCAGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACtttattctttctgatgtgatagtgaatgggattattttcttaatttctctttctga
tcattcattgttgtatagaaatgtgagagatttatgtgtattaattttgtgtcttgtaac
tttactgaattcattgttgagctctactagttttcTGATAACTTCTTCAGGATTTTCTGT
GAATCATGTCATCTGCAGACAACAACTATTTTACTTCTTAAATAATACTTTTAATCTCAA
ATTTTAGAGAGGAGAAAACTAGGTCTTAGGAATGTTAATTTGCAAAGGCCACAACCTAGA
AACCAGAATTCAAATCTAGGCCCAGGTGATGACACAGCTCTTAAGAACAGTTTATATTAC
CATCAAATTCAGTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-117, + strand, RNAz p=0.729678

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-117, + strand, RNAz p=0.729678

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-219, gnl|bosTau2|chr13 (32734812-32735035)
               

               
               2-219, gnl|hg17|chr4 (143115914-143118552)
               

               
               2-219, gnl|Hg17|chr4 (143116802-143116577)
               

               
               2-219, gnl|panTro1|chr3 (160384387-160387015)
               

               
               2-219, gnl|rheMac2|chrX (145875835-145878464)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-219, gnl|bosTau2|chr13 (32734812-32735035)
               

               
               2-219, gnl|hg17|chr4 (143115914-143118552)
               

               
               2-219, gnl|Hg17|chr4 (143116802-143116577)
               

               
               2-219, gnl|panTro1|chr3 (160384387-160387015)
               

               
               2-219, gnl|rheMac2|chrX (145875835-145878464)

	2-219, gnl\|bosTau2\|chr13 (32734812-32735035)
	2-219, gnl\|hg17\|chr4 (143115914-143118552)
	2-219, gnl\|Hg17\|chr4 (143116802-143116577)
	2-219, gnl\|panTro1\|chr3 (160384387-160387015)
	2-219, gnl\|rheMac2\|chrX (145875835-145878464)