Non-Coding RNA Search

Pla1-C000001059_H10

Sequence:


               
               GGCATTCTACCACTTctagctgtgtgaccttcagcaagtcacttaacctctctgtgcctt
gacttccccatctgtaaaatGGGGGGGGGTAAAACCCACCTCTAAGGGCTGTTACGAAGA
TTAAAAGGATCATTACGTGTAAAGCAGAACTGTGCCTGGCACTGAGAAGCGCCATATAAA
CCCTCCCAGATTCCCAATTAGGTGTCTGGCTATCTCTGTCCTTCCTACATCAAAGCAGCA
ACAACAGGGTAAACCCTTTGCCAAGAGGGTGCCAACTTCTGAGAAGCTGTAATCCCCACC
TGGGTGTTTTGTAAGAACTGGAGTTAAACTCAGGAAGACATTCCCCGGCTGCCCTGAGGA
AGAGATCTTAACATCACTGCCTCTTGATTTTCCTCTCTCTTCCCAACTTGTAGAGAATTT
ACAATATTATCATCAACAAACAACCAGGCCTCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATTCTACCACTTctagctgtgtgaccttcagcaagtcacttaacctctctgtgcctt
gacttccccatctgtaaaatGGGGGGGGGTAAAACCCACCTCTAAGGGCTGTTACGAAGA
TTAAAAGGATCATTACGTGTAAAGCAGAACTGTGCCTGGCACTGAGAAGCGCCATATAAA
CCCTCCCAGATTCCCAATTAGGTGTCTGGCTATCTCTGTCCTTCCTACATCAAAGCAGCA
ACAACAGGGTAAACCCTTTGCCAAGAGGGTGCCAACTTCTGAGAAGCTGTAATCCCCACC
TGGGTGTTTTGTAAGAACTGGAGTTAAACTCAGGAAGACATTCCCCGGCTGCCCTGAGGA
AGAGATCTTAACATCACTGCCTCTTGATTTTCCTCTCTCTTCCCAACTTGTAGAGAATTT
ACAATATTATCATCAACAAACAACCAGGCCTCCGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               192-310, - strand, RNAz p=0.934442

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-310, - strand, RNAz p=0.934442

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-455, gnl|bosTau2|chr28 (21682981-21683431)
               

               
               6-455, gnl|Hg17|chr10 (72784100-72783637)
               

               
               6-455, gnl|Mm7|chr10 (60239591-60240016)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-455, gnl|bosTau2|chr28 (21682981-21683431)
               

               
               6-455, gnl|Hg17|chr10 (72784100-72783637)
               

               
               6-455, gnl|Mm7|chr10 (60239591-60240016)

	6-455, gnl\|bosTau2\|chr28 (21682981-21683431)
	6-455, gnl\|Hg17\|chr10 (72784100-72783637)
	6-455, gnl\|Mm7\|chr10 (60239591-60240016)