Non-Coding RNA Search

Pla1-C000001059_H13

Sequence:


               
               CTCCTGCTGGTTCCAGAATCTCCTCTTCTGCAGCTTCTGGAATGGAAAGTGTTCTTCTGA
GAGCCTCCCCCATGGCCCCTGAAGGCGATGAGCAAGTTGGCCATTTTCTCTCTAGTCAGC
CTCCCCTAAAGACCCTTCTTGCTTCATCTTCTCGGCGGTTTGCATGGATAAGATGGATTC
TTCTTCCAGAGGTGAGAGGGGATCCTTTGTCCAGGGGCTACTTCTCTTGCCCCCTGGACC
TCTACCCATATCCCTGACTGACCCAAGAGTCTCTGGACCCCTTCCTTCTCATCATGAGTC
TCATAAGGAAGGTCAGTGGCTCTTGGACCAGAAGAAGAGGCTGAGCAGAGGATTCTGGGT
TCCTCCCTCCTCCTGGATATCCTGACATCCTTTATGGTCCTTTGCTTCTAGAACCTGGTG
CTCTCTACCTGAAGGTCTTATCTCAAATCCCTGAGTGCTCGCCAGCCTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGCTGGTTCCAGAATCTCCTCTTCTGCAGCTTCTGGAATGGAAAGTGTTCTTCTGA
GAGCCTCCCCCATGGCCCCTGAAGGCGATGAGCAAGTTGGCCATTTTCTCTCTAGTCAGC
CTCCCCTAAAGACCCTTCTTGCTTCATCTTCTCGGCGGTTTGCATGGATAAGATGGATTC
TTCTTCCAGAGGTGAGAGGGGATCCTTTGTCCAGGGGCTACTTCTCTTGCCCCCTGGACC
TCTACCCATATCCCTGACTGACCCAAGAGTCTCTGGACCCCTTCCTTCTCATCATGAGTC
TCATAAGGAAGGTCAGTGGCTCTTGGACCAGAAGAAGAGGCTGAGCAGAGGATTCTGGGT
TCCTCCCTCCTCCTGGATATCCTGACATCCTTTATGGTCCTTTGCTTCTAGAACCTGGTG
CTCTCTACCTGAAGGTCTTATCTCAAATCCCTGAGTGCTCGCCAGCCTCATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               212-472, - strand, RNAz p=0.997874
               

               
               215-440, - strand, RNAz p=0.923631

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-472, - strand, RNAz p=0.997874
               

               
               215-440, - strand, RNAz p=0.923631

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               261-362, - strand, RNAmicro p=0.959403
               

               
               289-352, + strand, RNAmicro p=0.900567

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               261-362, - strand, RNAmicro p=0.959403
               

               
               289-352, + strand, RNAmicro p=0.900567

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               7-189, gnl|bosTau2|chr5 (19177298-19177118)
               

               
               7-189, gnl|canFam2|chr27 (4954001-4953518)
               

               
               7-189, gnl|dasNov1|scaffold_99073 (698-210)
               

               
               7-189, gnl|hg17|chr12 (51922650-51923132)
               

               
               7-189, gnl|Hg17|chr12 (51922696-51922885)
               

               
               7-189, gnl|mm7|chr15 (102257381-102257872)
               

               
               7-189, gnl|Mm7|chr15 (102257427-102257613)
               

               
               7-189, gnl|panTro1|chr10 (53159910-53160392)
               

               
               7-189, gnl|rheMac2|chr11 (50305353-50305836)
               

               
               7-189, gnl|rn3|chr7 (141102710-141103160)
               


               
               200-472, gnl|bosTau2|chr5 (19177132-19176858)
               

               
               200-472, gnl|canFam2|chr27 (4954001-4953518)
               

               
               200-472, gnl|dasNov1|scaffold_99073 (698-210)
               

               
               200-472, gnl|hg17|chr12 (51922650-51923132)
               

               
               200-472, gnl|Hg17|chr12 (51922848-51923137)
               

               
               200-472, gnl|mm7|chr15 (102257381-102257872)
               

               
               200-472, gnl|Mm7|chr15 (102257575-102257877)
               

               
               200-472, gnl|panTro1|chr10 (53159910-53160392)
               

               
               200-472, gnl|rheMac2|chr11 (50305353-50305836)
               

               
               200-472, gnl|rn3|chr7 (141102710-141103160)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-189, gnl|bosTau2|chr5 (19177298-19177118)
               

               
               7-189, gnl|canFam2|chr27 (4954001-4953518)
               

               
               7-189, gnl|dasNov1|scaffold_99073 (698-210)
               

               
               7-189, gnl|hg17|chr12 (51922650-51923132)
               

               
               7-189, gnl|Hg17|chr12 (51922696-51922885)
               

               
               7-189, gnl|mm7|chr15 (102257381-102257872)
               

               
               7-189, gnl|Mm7|chr15 (102257427-102257613)
               

               
               7-189, gnl|panTro1|chr10 (53159910-53160392)
               

               
               7-189, gnl|rheMac2|chr11 (50305353-50305836)
               

               
               7-189, gnl|rn3|chr7 (141102710-141103160)
               


               
               200-472, gnl|bosTau2|chr5 (19177132-19176858)
               

               
               200-472, gnl|canFam2|chr27 (4954001-4953518)
               

               
               200-472, gnl|dasNov1|scaffold_99073 (698-210)
               

               
               200-472, gnl|hg17|chr12 (51922650-51923132)
               

               
               200-472, gnl|Hg17|chr12 (51922848-51923137)
               

               
               200-472, gnl|mm7|chr15 (102257381-102257872)
               

               
               200-472, gnl|Mm7|chr15 (102257575-102257877)
               

               
               200-472, gnl|panTro1|chr10 (53159910-53160392)
               

               
               200-472, gnl|rheMac2|chr11 (50305353-50305836)
               

               
               200-472, gnl|rn3|chr7 (141102710-141103160)

	212-472, - strand, RNAz p=0.997874
	215-440, - strand, RNAz p=0.923631

	261-362, - strand, RNAmicro p=0.959403
	289-352, + strand, RNAmicro p=0.900567

	7-189, gnl\|bosTau2\|chr5 (19177298-19177118)
	7-189, gnl\|canFam2\|chr27 (4954001-4953518)
	7-189, gnl\|dasNov1\|scaffold_99073 (698-210)
	7-189, gnl\|hg17\|chr12 (51922650-51923132)
	7-189, gnl\|Hg17\|chr12 (51922696-51922885)
	7-189, gnl\|mm7\|chr15 (102257381-102257872)
	7-189, gnl\|Mm7\|chr15 (102257427-102257613)
	7-189, gnl\|panTro1\|chr10 (53159910-53160392)
	7-189, gnl\|rheMac2\|chr11 (50305353-50305836)
	7-189, gnl\|rn3\|chr7 (141102710-141103160)

	200-472, gnl\|bosTau2\|chr5 (19177132-19176858)
	200-472, gnl\|canFam2\|chr27 (4954001-4953518)
	200-472, gnl\|dasNov1\|scaffold_99073 (698-210)
	200-472, gnl\|hg17\|chr12 (51922650-51923132)
	200-472, gnl\|Hg17\|chr12 (51922848-51923137)
	200-472, gnl\|mm7\|chr15 (102257381-102257872)
	200-472, gnl\|Mm7\|chr15 (102257575-102257877)
	200-472, gnl\|panTro1\|chr10 (53159910-53160392)
	200-472, gnl\|rheMac2\|chr11 (50305353-50305836)
	200-472, gnl\|rn3\|chr7 (141102710-141103160)