Non-Coding RNA Search

Pla1-C0000023_E09

Sequence:


               
               GTGAAAAGTGCCTCATTGTGTTTGGGCTTTATTTATTGAATGCATTTGAATGAGCGATCA
TTCTAAGAGCAGAGAGTCATTCAATTTGATTTCACAATGGGGTGACGGGTGAGGCTAGAA
ACTATGTTCTGAAATGCATTATCCAGAACACGGGAAACAAAACCACTTTTTAAAAGTGAC
TCATCTTTAATATCTCATAGCACTTTTGAAATACTTCATTCATTCATTTTTATAGCAAAC
TCTTAATTGAGAATGTCATAAAGCGCTTTGCAAAGAGAGAGGCAATCACGACCTGGGAAA
TTAAGTGGAGTAATTTACAAATAGGCTTTCGTCTGGCTGGAGATTTTAGCTGGTACACAA
TTTGCCTTTAGGTTATATTTGCAACACATACTCCCTTTGCCTACCCCATCAGCAGTATGG
GT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAAAGTGCCTCATTGTGTTTGGGCTTTATTTATTGAATGCATTTGAATGAGCGATCA
TTCTAAGAGCAGAGAGTCATTCAATTTGATTTCACAATGGGGTGACGGGTGAGGCTAGAA
ACTATGTTCTGAAATGCATTATCCAGAACACGGGAAACAAAACCACTTTTTAAAAGTGAC
TCATCTTTAATATCTCATAGCACTTTTGAAATACTTCATTCATTCATTTTTATAGCAAAC
TCTTAATTGAGAATGTCATAAAGCGCTTTGCAAAGAGAGAGGCAATCACGACCTGGGAAA
TTAAGTGGAGTAATTTACAAATAGGCTTTCGTCTGGCTGGAGATTTTAGCTGGTACACAA
TTTGCCTTTAGGTTATATTTGCAACACATACTCCCTTTGCCTACCCCATCAGCAGTATGG
GT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-159, + strand, RNAz p=0.928988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-159, + strand, RNAz p=0.928988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-419, gnl|bosTau2|chr11 (28331979-28331568)
               

               
               2-419, gnl|Hg17|chr2 (58984022-58984437)
               

               
               2-419, gnl|Mm7|chr11 (25724509-25724096)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-419, gnl|bosTau2|chr11 (28331979-28331568)
               

               
               2-419, gnl|Hg17|chr2 (58984022-58984437)
               

               
               2-419, gnl|Mm7|chr11 (25724509-25724096)

	2-419, gnl\|bosTau2\|chr11 (28331979-28331568)
	2-419, gnl\|Hg17\|chr2 (58984022-58984437)
	2-419, gnl\|Mm7\|chr11 (25724509-25724096)