Non-Coding RNA Search

Pla1-C0000023_G13

Sequence:


               
               CAGCAAAGGAGATGGTCTTCTTCTCCGATAGGATGTTCACCAGCATCCTGGGGACAATGG
TTTTTGAGAAGCAAATGTCAATGAAAGTCACAAAACTCAGGAAGAAAAACATGGGGGTGT
GGAGCTGGGCGTCTGAGCGGATGGCCAGGATGATGAGCAGGTTCCCTGTGATGGTGACCA
GGTACATGGTGAGGCAGAGGATAAAGAGTGGCTTCTGATCCTCAGACCGGGAGGAGAGTC
CCAGGAGGATGAAGTTGGAGACACTGCTGGTTTGGTTGACTCTTTCCATGGTCATGGAGC
CAGGAAAAATAGACAAGGTCCTACAATTTATCCCACATCTTTCATTCATACCTGCAACCA
CAAACAAGCCAACAAGTTGGTGTTTCTTCCTACCTTTTCTTTCCACCCATAGGATCATGA
TTTGCTAACACAGGGGCAACTTGTGAGCATCACGGCCCCTGAGGCTGCCCTTTCTTCCAC
CTTGAAGATTTCCCAAGCTTCTTGTATTGATAGTATGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAAAGGAGATGGTCTTCTTCTCCGATAGGATGTTCACCAGCATCCTGGGGACAATGG
TTTTTGAGAAGCAAATGTCAATGAAAGTCACAAAACTCAGGAAGAAAAACATGGGGGTGT
GGAGCTGGGCGTCTGAGCGGATGGCCAGGATGATGAGCAGGTTCCCTGTGATGGTGACCA
GGTACATGGTGAGGCAGAGGATAAAGAGTGGCTTCTGATCCTCAGACCGGGAGGAGAGTC
CCAGGAGGATGAAGTTGGAGACACTGCTGGTTTGGTTGACTCTTTCCATGGTCATGGAGC
CAGGAAAAATAGACAAGGTCCTACAATTTATCCCACATCTTTCATTCATACCTGCAACCA
CAAACAAGCCAACAAGTTGGTGTTTCTTCCTACCTTTTCTTTCCACCCATAGGATCATGA
TTTGCTAACACAGGGGCAACTTGTGAGCATCACGGCCCCTGAGGCTGCCCTTTCTTCCAC
CTTGAAGATTTCCCAAGCTTCTTGTATTGATAGTATGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824302|ref|XP_610968.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824302|ref|XP_610968.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-270, + strand, RNAz p=0.998979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-270, + strand, RNAz p=0.998979

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-270, gnl|bosTau2|chr10 (16653005-16653274)
               

               
               1-270, gnl|Hg17|chr14 (19717516-19717249)
               

               
               1-270, gnl|Mm7|chrX (44978383-44978599)
               


               
               3-269, gnl|bosTau2|chr10 (14339332-14339598)
               

               
               3-269, gnl|Hg17|chr14 (22241468-22241203)
               

               
               3-269, gnl|Mm7|chr6 (116541753-116541487)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-270, gnl|bosTau2|chr10 (16653005-16653274)
               

               
               1-270, gnl|Hg17|chr14 (19717516-19717249)
               

               
               1-270, gnl|Mm7|chrX (44978383-44978599)
               


               
               3-269, gnl|bosTau2|chr10 (14339332-14339598)
               

               
               3-269, gnl|Hg17|chr14 (22241468-22241203)
               

               
               3-269, gnl|Mm7|chr6 (116541753-116541487)

	1-270, gnl\|bosTau2\|chr10 (16653005-16653274)
	1-270, gnl\|Hg17\|chr14 (19717516-19717249)
	1-270, gnl\|Mm7\|chrX (44978383-44978599)

	3-269, gnl\|bosTau2\|chr10 (14339332-14339598)
	3-269, gnl\|Hg17\|chr14 (22241468-22241203)
	3-269, gnl\|Mm7\|chr6 (116541753-116541487)