Non-Coding RNA Search

Pla1-C0000024_P19

Sequence:


               
               GTACAGTGGGGGAAAGAAAAAAGAAAGTTGTGTGAAGTAGAAAAATTAGGTCTCCATAAG
AAAACCTACAAAATAAGATGTATGGACCTAAGCAAGGAGAATTTGGGAGAATTTAGGAAC
TAGAAATGCATATGCAGACACTCATCACAGTGGACTGCATGGCTGCTTGAATGGAGCTTA
GTTCTCTGCTCTGCCTCTGTCCTCTGCTGTGCTGCATTCTGTTACCAGGGACTCAAGCCT
GGCTTAGTACTCAGTGAACATAACTGTCTTCTGGGCCAGAACTTTAGCTTTATTGTGTTG
TCCTGTGCAGTCATAAGCCTCATGTTTATATTGTGTTGGCTTGGGTTCTTGTCTTCAATT
TTCTTCTCTCTGGGGGCCTCTGCACTCTCGCTTTGCTGTGCTGTAGAGTTATCCCAGATG
CAGAACCAGCCCTCACTCTCACTCTTGTTCTGTTTTTTGGTGTAATGTCTAGCTTTATTG
CAGCTCCTCAGCAGACTGCTCTCTGGAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACAGTGGGGGAAAGAAAAAAGAAAGTTGTGTGAAGTAGAAAAATTAGGTCTCCATAAG
AAAACCTACAAAATAAGATGTATGGACCTAAGCAAGGAGAATTTGGGAGAATTTAGGAAC
TAGAAATGCATATGCAGACACTCATCACAGTGGACTGCATGGCTGCTTGAATGGAGCTTA
GTTCTCTGCTCTGCCTCTGTCCTCTGCTGTGCTGCATTCTGTTACCAGGGACTCAAGCCT
GGCTTAGTACTCAGTGAACATAACTGTCTTCTGGGCCAGAACTTTAGCTTTATTGTGTTG
TCCTGTGCAGTCATAAGCCTCATGTTTATATTGTGTTGGCTTGGGTTCTTGTCTTCAATT
TTCTTCTCTCTGGGGGCCTCTGCACTCTCGCTTTGCTGTGCTGTAGAGTTATCCCAGATG
CAGAACCAGCCCTCACTCTCACTCTTGTTCTGTTTTTTGGTGTAATGTCTAGCTTTATTG
CAGCTCCTCAGCAGACTGCTCTCTGGAACTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               216-331, + strand, RNAz p=0.519356
               

               
               372-506, - strand, RNAz p=0.972859

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-331, + strand, RNAz p=0.519356
               

               
               372-506, - strand, RNAz p=0.972859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-506, gnl|bosTau2|chr15 (48846673-48847158)
               

               
               26-506, gnl|Hg17|chr11 (47457537-47457043)
               

               
               26-506, gnl|Mm7|chr2 (90856962-90857373)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-506, gnl|bosTau2|chr15 (48846673-48847158)
               

               
               26-506, gnl|Hg17|chr11 (47457537-47457043)
               

               
               26-506, gnl|Mm7|chr2 (90856962-90857373)

	216-331, + strand, RNAz p=0.519356
	372-506, - strand, RNAz p=0.972859

	26-506, gnl\|bosTau2\|chr15 (48846673-48847158)
	26-506, gnl\|Hg17\|chr11 (47457537-47457043)
	26-506, gnl\|Mm7\|chr2 (90856962-90857373)