Non-Coding RNA Search

Pla1-C0000028_B17

Sequence:


               
               CAACGACAGCCTCCTGCAGACCACGGAGCAGCGGCGGCGGGCCCAAGAGGACGCCCTGCA
GCAGAAGGCCTGCGGCTCCGAGATGCTGCAGAAGAAGCAGCAGCTGGAGATAGAGCTCAA
GCAGGTCATCCAGCAGCGCTCCGAGGACAACGCCCGGCACAAGCAGTCCCTGGAGGAGGC
GGCCAGGACCATCCAGGACAAGAATAAGGAGATCGAGAGACTCAAGGCGGAGTTTCAGGA
GGAGGCCAAGCGCCGCCGGGAATACGAGAGTGAACTGGCCAAGGTAAGGAGCAGTTACGA
CGAGGAGATCATTAGCCTAAAGAACCAGTTCGAGAAGGAGATCAACATCACCAAGACCAC
CATCCACCAGCTGACCCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGACAGCCTCCTGCAGACCACGGAGCAGCGGCGGCGGGCCCAAGAGGACGCCCTGCA
GCAGAAGGCCTGCGGCTCCGAGATGCTGCAGAAGAAGCAGCAGCTGGAGATAGAGCTCAA
GCAGGTCATCCAGCAGCGCTCCGAGGACAACGCCCGGCACAAGCAGTCCCTGGAGGAGGC
GGCCAGGACCATCCAGGACAAGAATAAGGAGATCGAGAGACTCAAGGCGGAGTTTCAGGA
GGAGGCCAAGCGCCGCCGGGAATACGAGAGTGAACTGGCCAAGGTAAGGAGCAGTTACGA
CGAGGAGATCATTAGCCTAAAGAACCAGTTCGAGAAGGAGATCAACATCACCAAGACCAC
CATCCACCAGCTGACCCTGCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.619135
               

               
               200-319, - strand, RNAz p=0.689302

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.619135
               

               
               200-319, - strand, RNAz p=0.689302

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-381, gnl|bosTau2|chr23 (40077547-40077167)
               

               
               1-381, gnl|Hg17|chr6 (7525190-7525570)
               

               
               1-381, gnl|Mm7|chr13 (37610939-37611319)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-381, gnl|bosTau2|chr23 (40077547-40077167)
               

               
               1-381, gnl|Hg17|chr6 (7525190-7525570)
               

               
               1-381, gnl|Mm7|chr13 (37610939-37611319)

	40-159, - strand, RNAz p=0.619135
	200-319, - strand, RNAz p=0.689302

	1-381, gnl\|bosTau2\|chr23 (40077547-40077167)
	1-381, gnl\|Hg17\|chr6 (7525190-7525570)
	1-381, gnl\|Mm7\|chr13 (37610939-37611319)