Non-Coding RNA Search

Pla1-C0000029_H23

Sequence:


               
               TGTAGGCTAGAAAGCAGCCGTTGTTAAGGGCTTTATTTTGGCCCTTATCATTTATACTGC
AGGTATGCATATTTGTAGGTGTATTATAAATAAATTGTAGTATGCTCTGGATATAATAAA
AGAATATCATATACAAGGTAATAGAATAGTTGAAACGTATTGAAAATATTTGAAAAAAAA
ACTACATGGCAAAATATACAATTGTATATACTAAAAAAGAGTGAAAATATAACAAAAATG
CCAGATTTTAGAGTACTTACTTAATGAATATGTCTTAATGTGCTAGAGGTATTGAGCTTA
ATGGTAAATTTACAGTTTCAGTTTCTTATAATTTTTAAGTTAAATAATTGGACAAAAATC
ATTTATCCATGAACCACTGTATTACAAAGCTATTGTTTCATTTGTTTTCATACTGATCAT
TGCAGTTTATAAATTCTCTCATTTCCCCCACCTCACTCATGGTTAAAAACTCTTTTATCT
AT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAGGCTAGAAAGCAGCCGTTGTTAAGGGCTTTATTTTGGCCCTTATCATTTATACTGC
AGGTATGCATATTTGTAGGTGTATTATAAATAAATTGTAGTATGCTCTGGATATAATAAA
AGAATATCATATACAAGGTAATAGAATAGTTGAAACGTATTGAAAATATTTGAAAAAAAA
ACTACATGGCAAAATATACAATTGTATATACTAAAAAAGAGTGAAAATATAACAAAAATG
CCAGATTTTAGAGTACTTACTTAATGAATATGTCTTAATGTGCTAGAGGTATTGAGCTTA
ATGGTAAATTTACAGTTTCAGTTTCTTATAATTTTTAAGTTAAATAATTGGACAAAAATC
ATTTATCCATGAACCACTGTATTACAAAGCTATTGTTTCATTTGTTTTCATACTGATCAT
TGCAGTTTATAAATTCTCTCATTTCCCCCACCTCACTCATGGTTAAAAACTCTTTTATCT
AT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               43-160, + strand, RNAz p=0.528095

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-160, + strand, RNAz p=0.528095

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               3-217, gnl|bosTau2|chr16 (25866774-25866573)
               

               
               3-217, gnl|canFam2|chr7 (31629119-31628978)
               

               
               3-217, gnl|dasNov1|scaffold_294494 (270-111)
               

               
               3-217, gnl|echTel1|scaffold_254517 (4545-4714)
               

               
               3-217, gnl|hg17|chr1 (166701867-166702019)
               

               
               3-217, gnl|Hg17|chr1 (166702071-166701869)
               

               
               3-217, gnl|loxAfr1|scaffold_198183 (344-515)
               

               
               3-217, gnl|mm7|chr1 (163807761-163807644)
               

               
               3-217, gnl|monDom2|scaffold_16 (21185930-21186139)
               

               
               3-217, gnl|oryCun1|scaffold_145022 (7630-7473)
               

               
               3-217, gnl|panTro1|chr1 (148973045-148973197)
               

               
               3-217, gnl|rheMac2|chr1 (199712655-199712807)
               

               
               3-217, gnl|rn3|chr13 (79611690-79611546)
               

               
               3-217, gnl|xenTro1|scaffold_160 (343611-343470)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-217, gnl|bosTau2|chr16 (25866774-25866573)
               

               
               3-217, gnl|canFam2|chr7 (31629119-31628978)
               

               
               3-217, gnl|dasNov1|scaffold_294494 (270-111)
               

               
               3-217, gnl|echTel1|scaffold_254517 (4545-4714)
               

               
               3-217, gnl|hg17|chr1 (166701867-166702019)
               

               
               3-217, gnl|Hg17|chr1 (166702071-166701869)
               

               
               3-217, gnl|loxAfr1|scaffold_198183 (344-515)
               

               
               3-217, gnl|mm7|chr1 (163807761-163807644)
               

               
               3-217, gnl|monDom2|scaffold_16 (21185930-21186139)
               

               
               3-217, gnl|oryCun1|scaffold_145022 (7630-7473)
               

               
               3-217, gnl|panTro1|chr1 (148973045-148973197)
               

               
               3-217, gnl|rheMac2|chr1 (199712655-199712807)
               

               
               3-217, gnl|rn3|chr13 (79611690-79611546)
               

               
               3-217, gnl|xenTro1|scaffold_160 (343611-343470)

	3-217, gnl\|bosTau2\|chr16 (25866774-25866573)
	3-217, gnl\|canFam2\|chr7 (31629119-31628978)
	3-217, gnl\|dasNov1\|scaffold_294494 (270-111)
	3-217, gnl\|echTel1\|scaffold_254517 (4545-4714)
	3-217, gnl\|hg17\|chr1 (166701867-166702019)
	3-217, gnl\|Hg17\|chr1 (166702071-166701869)
	3-217, gnl\|loxAfr1\|scaffold_198183 (344-515)
	3-217, gnl\|mm7\|chr1 (163807761-163807644)
	3-217, gnl\|monDom2\|scaffold_16 (21185930-21186139)
	3-217, gnl\|oryCun1\|scaffold_145022 (7630-7473)
	3-217, gnl\|panTro1\|chr1 (148973045-148973197)
	3-217, gnl\|rheMac2\|chr1 (199712655-199712807)
	3-217, gnl\|rn3\|chr13 (79611690-79611546)
	3-217, gnl\|xenTro1\|scaffold_160 (343611-343470)