Non-Coding RNA Search

Pla1-C0000029_L13

Sequence:


               
               GAATGCTCATTATCTGCAAACCACACTGAACTCCAGGAGAACGGTACCAAACGCAGGGAA
ATAAAGAAAGACTTTGCTCCCCTTTCCTTTACCTGCCAAGATGAAAATTCACCCTTGAAG
TTACTCATTTGCAAATGCCTTTGAAGTCATTAGATAATACAACTGGCTTCAAAGGCACAG
GAGGCCAAATTTCACATTGGATCTCTGTGTACCCAACAGCAGAATTTGACTCCCAACCTC
TAACAAAACCAGCGGTGCATATCGGTTTTAAAAAGTGAGTTTTCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGCTCATTATCTGCAAACCACACTGAACTCCAGGAGAACGGTACCAAACGCAGGGAA
ATAAAGAAAGACTTTGCTCCCCTTTCCTTTACCTGCCAAGATGAAAATTCACCCTTGAAG
TTACTCATTTGCAAATGCCTTTGAAGTCATTAGATAATACAACTGGCTTCAAAGGCACAG
GAGGCCAAATTTCACATTGGATCTCTGTGTACCCAACAGCAGAATTTGACTCCCAACCTC
TAACAAAACCAGCGGTGCATATCGGTTTTAAAAAGTGAGTTTTCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-237, + strand, RNAz p=0.999958

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-237, + strand, RNAz p=0.999958

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               95-217, UI-H-FL0-bdi-i-13-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone 
(gb|CA422406.1|), blast E-value=7e-22, identity=87.1%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               95-217, UI-H-FL0-bdi-i-13-0-UI.s1 NCI_CGAP_FL0 Homo sapiens cDNA clone 
(gb|CA422406.1|), blast E-value=7e-22, identity=87.1%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-287, gnl|bosTau2|chr13 (10422842-10422557)
               

               
               2-287, gnl|Hg17|chr10 (33529389-33529106)
               

               
               2-287, gnl|Mm7|chr8 (127093323-127093581)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-287, gnl|bosTau2|chr13 (10422842-10422557)
               

               
               2-287, gnl|Hg17|chr10 (33529389-33529106)
               

               
               2-287, gnl|Mm7|chr8 (127093323-127093581)

	2-287, gnl\|bosTau2\|chr13 (10422842-10422557)
	2-287, gnl\|Hg17\|chr10 (33529389-33529106)
	2-287, gnl\|Mm7\|chr8 (127093323-127093581)