Non-Coding RNA Search

Pla1-C0000030_A24

Sequence:


               
               GGACCTCCTCCTCCTCCTCCTGAAGCACGGTGCCAGTGTGGGGGCCAGAGATGCAAACCA
AGCCGTCCCCCTCCACCTGGCCTGCCAGAAGGGCCACTTCCAGGTGGTGAAGTGTCTATT
AGCCTCTAATGCAAAACCCAATAAAAAGGATCTAAGTGGAAACACACCCCTCATTTATGC
CTGTTCCAGAGGCCACCACGAGGTCGCGGCACTATTGCTGCAGCACGGGGCCTCCATTAA
CACTTCTAACAACAAGGGCAACACAGCCCTGCACGAGGCTGTGATAGAAAAGCACGTCTT
TGTGGTGGAGCTGCTTCTGCTTCACGGAGCATCAGTTCAGGTCCTGAACAAGAGGCAGTG
CACAGCTATTGACTGTGCTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTCCTCCTCCTCCTCCTGAAGCACGGTGCCAGTGTGGGGGCCAGAGATGCAAACCA
AGCCGTCCCCCTCCACCTGGCCTGCCAGAAGGGCCACTTCCAGGTGGTGAAGTGTCTATT
AGCCTCTAATGCAAAACCCAATAAAAAGGATCTAAGTGGAAACACACCCCTCATTTATGC
CTGTTCCAGAGGCCACCACGAGGTCGCGGCACTATTGCTGCAGCACGGGGCCTCCATTAA
CACTTCTAACAACAAGGGCAACACAGCCCTGCACGAGGCTGTGATAGAAAAGCACGTCTT
TGTGGTGGAGCTGCTTCTGCTTCACGGAGCATCAGTTCAGGTCCTGAACAAGAGGCAGTG
CACAGCTATTGACTGTGCTGAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               261-383, + strand, RNAz p=0.99141

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               261-383, + strand, RNAz p=0.99141

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               222-383, gnl|bosTau2|chr18 (35450541-35450702)
               

               
               222-383, gnl|canFam2|chr1 (122284405-122284201)
               

               
               222-383, gnl|danRer3|chrNA (16198675-16198875)
               

               
               222-383, gnl|dasNov1|scaffold_84301 (6797-7000)
               

               
               222-383, gnl|echTel1|scaffold_279377 (9633-9838)
               

               
               222-383, gnl|fr1|chrUn (132075515-132075338)
               

               
               222-383, gnl|galGal2|chr11 (10065845-10066051)
               

               
               222-383, gnl|hg17|chr19 (37786997-37787202)
               

               
               222-383, gnl|Hg17|chr19 (37787172-37787011)
               

               
               222-383, gnl|mm7|chr7 (32524343-32524142)
               

               
               222-383, gnl|Mm7|chr7 (32524167-32524328)
               

               
               222-383, gnl|monDom2|scaffold_35 (3980640-3980453)
               

               
               222-383, gnl|oryCun1|scaffold_189279 (178854-179058)
               

               
               222-383, gnl|panTro1|chr20 (34290822-34291027)
               

               
               222-383, gnl|rheMac2|chr19 (39121719-39121924)
               

               
               222-383, gnl|tetNig1|chrUn_random (26075085-26074926)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-383, gnl|bosTau2|chr18 (35450541-35450702)
               

               
               222-383, gnl|canFam2|chr1 (122284405-122284201)
               

               
               222-383, gnl|danRer3|chrNA (16198675-16198875)
               

               
               222-383, gnl|dasNov1|scaffold_84301 (6797-7000)
               

               
               222-383, gnl|echTel1|scaffold_279377 (9633-9838)
               

               
               222-383, gnl|fr1|chrUn (132075515-132075338)
               

               
               222-383, gnl|galGal2|chr11 (10065845-10066051)
               

               
               222-383, gnl|hg17|chr19 (37786997-37787202)
               

               
               222-383, gnl|Hg17|chr19 (37787172-37787011)
               

               
               222-383, gnl|mm7|chr7 (32524343-32524142)
               

               
               222-383, gnl|Mm7|chr7 (32524167-32524328)
               

               
               222-383, gnl|monDom2|scaffold_35 (3980640-3980453)
               

               
               222-383, gnl|oryCun1|scaffold_189279 (178854-179058)
               

               
               222-383, gnl|panTro1|chr20 (34290822-34291027)
               

               
               222-383, gnl|rheMac2|chr19 (39121719-39121924)
               

               
               222-383, gnl|tetNig1|chrUn_random (26075085-26074926)

	222-383, gnl\|bosTau2\|chr18 (35450541-35450702)
	222-383, gnl\|canFam2\|chr1 (122284405-122284201)
	222-383, gnl\|danRer3\|chrNA (16198675-16198875)
	222-383, gnl\|dasNov1\|scaffold_84301 (6797-7000)
	222-383, gnl\|echTel1\|scaffold_279377 (9633-9838)
	222-383, gnl\|fr1\|chrUn (132075515-132075338)
	222-383, gnl\|galGal2\|chr11 (10065845-10066051)
	222-383, gnl\|hg17\|chr19 (37786997-37787202)
	222-383, gnl\|Hg17\|chr19 (37787172-37787011)
	222-383, gnl\|mm7\|chr7 (32524343-32524142)
	222-383, gnl\|Mm7\|chr7 (32524167-32524328)
	222-383, gnl\|monDom2\|scaffold_35 (3980640-3980453)
	222-383, gnl\|oryCun1\|scaffold_189279 (178854-179058)
	222-383, gnl\|panTro1\|chr20 (34290822-34291027)
	222-383, gnl\|rheMac2\|chr19 (39121719-39121924)
	222-383, gnl\|tetNig1\|chrUn_random (26075085-26074926)