Non-Coding RNA Search

Pla1-C0000030_I21

Sequence:


               
               CTCGGGCCAGGTGGGCCACTGGGCGCAGCGACAGCTGGGCGGCCAGGGGGTCCCCGAGGC
TGGCCTTCCGGGCGCGGCCCTCTTCTCTTCTGCTTCCCTCCTCTCTAGTTGTGTGTCAGG
GCTGGAGGGAGGACGGGGCGTCTCTCCCCCCGTGTGTGATTGGAGTGCTGTGTCTTTCTT
TTCTAGTACTTGGTCTGATGATAGCTGTGCTCTTACCTCGAGTCAGCAGCACCTGGAGCC
CCAAGTGCGCGACACTTGGTCCCGCTTCCCACCGAGGCAGGCGGCCTGGCGTTGGCGGTA
GGCAGGGACAGCAGGGGTGGCTCCAGGGTGAGGGCCCAATGGGCAGATGCCTGCCTGGAT
AGATGGGGTGTAGATATGTGGCATATAGAGATTTATATTTTATAAGGGGAGGGGGGAATG
GCACCTCCTGGGACTGGCAGGGCTGGGAGGTGTGCTGTCAAGCACATGGGCCCACGTTCG
CATCCCTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGGCCAGGTGGGCCACTGGGCGCAGCGACAGCTGGGCGGCCAGGGGGTCCCCGAGGC
TGGCCTTCCGGGCGCGGCCCTCTTCTCTTCTGCTTCCCTCCTCTCTAGTTGTGTGTCAGG
GCTGGAGGGAGGACGGGGCGTCTCTCCCCCCGTGTGTGATTGGAGTGCTGTGTCTTTCTT
TTCTAGTACTTGGTCTGATGATAGCTGTGCTCTTACCTCGAGTCAGCAGCACCTGGAGCC
CCAAGTGCGCGACACTTGGTCCCGCTTCCCACCGAGGCAGGCGGCCTGGCGTTGGCGGTA
GGCAGGGACAGCAGGGGTGGCTCCAGGGTGAGGGCCCAATGGGCAGATGCCTGCCTGGAT
AGATGGGGTGTAGATATGTGGCATATAGAGATTTATATTTTATAAGGGGAGGGGGGAATG
GCACCTCCTGGGACTGGCAGGGCTGGGAGGTGTGCTGTCAAGCACATGGGCCCACGTTCG
CATCCCTTGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               228-491, - strand, RNAz p=0.996981

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-491, - strand, RNAz p=0.996981

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-491, gnl|bosTau2|chr11 (53955627-53955127)
               

               
               1-491, gnl|Hg17|chr2 (25367177-25366684)
               

               
               1-491, gnl|Mm7|chr12 (3827681-3828149)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-491, gnl|bosTau2|chr11 (53955627-53955127)
               

               
               1-491, gnl|Hg17|chr2 (25367177-25366684)
               

               
               1-491, gnl|Mm7|chr12 (3827681-3828149)

	1-491, gnl\|bosTau2\|chr11 (53955627-53955127)
	1-491, gnl\|Hg17\|chr2 (25367177-25366684)
	1-491, gnl\|Mm7\|chr12 (3827681-3828149)