Non-Coding RNA Search

Pla1-C0000030_J19

Sequence:


               
               CTTGCTGCACCTCAGTTGCCCTGTCTGTACAGTGGAGTGAATGATGCTGCGTGGTGACTT
GGTTGTAAGGATGAGGATATGCAAGTGTGTTGCAGTGGTCCTGTTGCTTAACCCCTGGAT
GCTTAGCTGAGACAACACTTCTCTAGGGATTATTTTAGCAATTTTAGAGACCAAAGCATC
AATGACTTTCCCCCCAAACATTACCCGTCCCCACCCCCATAAACATTTAGCTCTGGAATC
TGAGTGCTAAGAATTAAATTTCAGGCCCTCTTTCTCACTGAGTCAGTTTGAACAAGTGAC
TCAACCTCTCTTCATGCTTCTATAAAAATAGAAAATATAAAAATTATAAAAGCTCTCTTC
TACAAAATGAGGATAATAATAGCACTTAACCCACACAGTTGGCATTAGGATTGACTGTGA
TGATGGATAGGAAGCATGCAGCACATTACCTAACACATAGTAAGCAGTTCATAAGTCATC
ATTAAAACACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCTGCACCTCAGTTGCCCTGTCTGTACAGTGGAGTGAATGATGCTGCGTGGTGACTT
GGTTGTAAGGATGAGGATATGCAAGTGTGTTGCAGTGGTCCTGTTGCTTAACCCCTGGAT
GCTTAGCTGAGACAACACTTCTCTAGGGATTATTTTAGCAATTTTAGAGACCAAAGCATC
AATGACTTTCCCCCCAAACATTACCCGTCCCCACCCCCATAAACATTTAGCTCTGGAATC
TGAGTGCTAAGAATTAAATTTCAGGCCCTCTTTCTCACTGAGTCAGTTTGAACAAGTGAC
TCAACCTCTCTTCATGCTTCTATAAAAATAGAAAATATAAAAATTATAAAAGCTCTCTTC
TACAAAATGAGGATAATAATAGCACTTAACCCACACAGTTGGCATTAGGATTGACTGTGA
TGATGGATAGGAAGCATGCAGCACATTACCTAACACATAGTAAGCAGTTCATAAGTCATC
ATTAAAACACATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               148-267, + strand, RNAz p=0.505603

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-267, + strand, RNAz p=0.505603

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               31-484, gnl|bosTau2|chr10 (14533785-14534238)
               

               
               31-484, gnl|Hg17|chr14 (22017359-22016933)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-484, gnl|bosTau2|chr10 (14533785-14534238)
               

               
               31-484, gnl|Hg17|chr14 (22017359-22016933)

	31-484, gnl\|bosTau2\|chr10 (14533785-14534238)
	31-484, gnl\|Hg17\|chr14 (22017359-22016933)