Non-Coding RNA Search

Pla1-C0000030_P04

Sequence:


               
               CAGTTTTGTAATTTTTGATAATAGCAATTACTGCATGAGTAGAAAATCTTTCAGAGAAGA
AGTAAAGCACTTAATTAAAAAATAATCTCATTATTTCTAGAATACGTCCCAGTGAGGTCA
ATAGCTCTTTATACCCTCATTTTACAGCCGAGAAGGCTGAGACACAAAGTGCCTTGCTCA
AGGTCACAAAGTGAGTCTGTGGAGAAAGGAGATTTTTTCATATGGTCTGTGCTAGGTTAT
GTTTTTGGTCTGTCTTACGGACCTTCTCCTTTTGAGGCACAGTAAAATTTGCATTATCTG
ATAACCTTGGAATATGGTATAAAGTTTAAAGGTTGATTTTTGAAATGTGTTGCATAAACC
AACCTGTTCATTATGTTCAGGATGAGGAGTTAAGTTATATAATCAAATTTAGTTTATTCT
CTTTGTAAAACATTTTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTTTTGTAATTTTTGATAATAGCAATTACTGCATGAGTAGAAAATCTTTCAGAGAAGA
AGTAAAGCACTTAATTAAAAAATAATCTCATTATTTCTAGAATACGTCCCAGTGAGGTCA
ATAGCTCTTTATACCCTCATTTTACAGCCGAGAAGGCTGAGACACAAAGTGCCTTGCTCA
AGGTCACAAAGTGAGTCTGTGGAGAAAGGAGATTTTTTCATATGGTCTGTGCTAGGTTAT
GTTTTTGGTCTGTCTTACGGACCTTCTCCTTTTGAGGCACAGTAAAATTTGCATTATCTG
ATAACCTTGGAATATGGTATAAAGTTTAAAGGTTGATTTTTGAAATGTGTTGCATAAACC
AACCTGTTCATTATGTTCAGGATGAGGAGTTAAGTTATATAATCAAATTTAGTTTATTCT
CTTTGTAAAACATTTTTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-273, + strand, RNAz p=0.974438

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-273, + strand, RNAz p=0.974438

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-439, gnl|bosTau2|chr2 (69990987-69990550)
               

               
               1-439, gnl|Hg17|chr2 (230505146-230504750)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-439, gnl|bosTau2|chr2 (69990987-69990550)
               

               
               1-439, gnl|Hg17|chr2 (230505146-230504750)

	1-439, gnl\|bosTau2\|chr2 (69990987-69990550)
	1-439, gnl\|Hg17\|chr2 (230505146-230504750)