Non-Coding RNA Search

Pla1-C0000031_K23

Sequence:


               
               CCGGCCCCGCCCTGCCTCCCTGGGCACCGGAAAGGACTTCGAGGGTATCCAGGTGGGCAA
GCTGGCCGATCTGGAGCAGGAGCAGAGCTCCAAGCGCCTGTCTTACCAAGGACAGAGCCG
TGACAAGCTGCCTCGACCCGCCTGTGTCAGTGTCAAGATCTCCCCGAAAGGCGTGTCTGA
TGAGCACAGAAGGGAGGCTCTGAAGAAGCTGGGGCTCTTGAAGGAGTAGGCGCTGGACAC
CCGCACCGCCACCCAACCCCCTCCCTCACCCGCTTGTGCAAGAAGAGACCCCGGGCTCCA
CTGAGCCTTCCTCCCCTCCTCACAGCTCAGGGGCTGGACAGGGATCGGCTTCTTCCAACG
TCCTGTTCCCTCTGAGGGAGCCAGTGGAGCATACGTTTATCTTCAGAGTGGTCGTGCCAG
CAAGTGCCTACACGAATCGTCCTGAGGATGGTTTCCACAGGCGGGTGTGTGCGTGTGTGT
GTGTGTGTGTGTTATAACCTGTATATATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCCCGCCCTGCCTCCCTGGGCACCGGAAAGGACTTCGAGGGTATCCAGGTGGGCAA
GCTGGCCGATCTGGAGCAGGAGCAGAGCTCCAAGCGCCTGTCTTACCAAGGACAGAGCCG
TGACAAGCTGCCTCGACCCGCCTGTGTCAGTGTCAAGATCTCCCCGAAAGGCGTGTCTGA
TGAGCACAGAAGGGAGGCTCTGAAGAAGCTGGGGCTCTTGAAGGAGTAGGCGCTGGACAC
CCGCACCGCCACCCAACCCCCTCCCTCACCCGCTTGTGCAAGAAGAGACCCCGGGCTCCA
CTGAGCCTTCCTCCCCTCCTCACAGCTCAGGGGCTGGACAGGGATCGGCTTCTTCCAACG
TCCTGTTCCCTCTGAGGGAGCCAGTGGAGCATACGTTTATCTTCAGAGTGGTCGTGCCAG
CAAGTGCCTACACGAATCGTCCTGAGGATGGTTTCCACAGGCGGGTGTGTGCGTGTGTGT
GTGTGTGTGTGTTATAACCTGTATATATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55589226|ref|XP_514154.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55589226|ref|XP_514154.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-238, + strand, RNAz p=0.764176

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-238, + strand, RNAz p=0.764176

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_023938, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_023938, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-271, gnl|bosTau2|chr16 (3844248-3844520)
               

               
               1-271, gnl|Hg17|chr1 (203583926-203583615)
               

               
               1-271, gnl|Mm7|chr1 (130647717-130648028)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-271, gnl|bosTau2|chr16 (3844248-3844520)
               

               
               1-271, gnl|Hg17|chr1 (203583926-203583615)
               

               
               1-271, gnl|Mm7|chr1 (130647717-130648028)

	1-271, gnl\|bosTau2\|chr16 (3844248-3844520)
	1-271, gnl\|Hg17\|chr1 (203583926-203583615)
	1-271, gnl\|Mm7\|chr1 (130647717-130648028)