Non-Coding RNA Search

Pla1-C0000031_M24

Sequence:


               
               CTCCAGGGTCCTGACCCTGGGACTGCTCCTCCGGCCTGAGGGACTGACCAGTGTTCTTGA
GCTGGGTCCAGAGGCTGACCAGCCTGAGGCTGCTGCCTTCCGCCAGTTCTGGGGATCTCG
CTCAGAGCTTCGGCGTTTCCAGGATGGAGCCATTCGGGAAGCTGTGGTCTGGGAAGCAGC
CTCTCTGGCCCAGAAGCGCCTTATTCCCCACCAGGTGGTCACTCACCTCTTGGCGCTGTA
AGTGTTAGCATCTGAATGCCAGGAGGCAACCGTGGGCTGGGGATGCTTTTAGGTGGTTCT
GCTCTAAGCTCTGGGGGTCAAGAGCTCACATCCAGCAGCTCACTCCATGCCCCCAGTGCC
CACAGTGTGTCTGCACCCCTTTTCCAGCCATGCTGACATTCCAGATACCTGTGTCCACTA
TACAGGGGGCTTCCTGGATGCACTGATCCAAGGCCTGAAAGAGGTAAGGGCTCTGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCAGGGTCCTGACCCTGGGACTGCTCCTCCGGCCTGAGGGACTGACCAGTGTTCTTGA
GCTGGGTCCAGAGGCTGACCAGCCTGAGGCTGCTGCCTTCCGCCAGTTCTGGGGATCTCG
CTCAGAGCTTCGGCGTTTCCAGGATGGAGCCATTCGGGAAGCTGTGGTCTGGGAAGCAGC
CTCTCTGGCCCAGAAGCGCCTTATTCCCCACCAGGTGGTCACTCACCTCTTGGCGCTGTA
AGTGTTAGCATCTGAATGCCAGGAGGCAACCGTGGGCTGGGGATGCTTTTAGGTGGTTCT
GCTCTAAGCTCTGGGGGTCAAGAGCTCACATCCAGCAGCTCACTCCATGCCCCCAGTGCC
CACAGTGTGTCTGCACCCCTTTTCCAGCCATGCTGACATTCCAGATACCTGTGTCCACTA
TACAGGGGGCTTCCTGGATGCACTGATCCAAGGCCTGAAAGAGGTAAGGGCTCTGGTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-445, + strand, RNAz p=0.846457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-445, + strand, RNAz p=0.846457

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               267-392, - strand, RNAmicro p=0.996403
               

               
               178-266, + strand, RNAmicro p=0.994606

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               267-392, - strand, RNAmicro p=0.996403
               

               
               178-266, + strand, RNAmicro p=0.994606

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC030139, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC030139, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               87-479, gnl|bosTau2|chr8 (37963401-37963010)
               

               
               87-479, gnl|Hg17|chr9 (33457262-33456897)
               

               
               87-479, gnl|Mm7|chr4 (41258026-41257691)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-479, gnl|bosTau2|chr8 (37963401-37963010)
               

               
               87-479, gnl|Hg17|chr9 (33457262-33456897)
               

               
               87-479, gnl|Mm7|chr4 (41258026-41257691)

	267-392, - strand, RNAmicro p=0.996403
	178-266, + strand, RNAmicro p=0.994606

	87-479, gnl\|bosTau2\|chr8 (37963401-37963010)
	87-479, gnl\|Hg17\|chr9 (33457262-33456897)
	87-479, gnl\|Mm7\|chr4 (41258026-41257691)