Non-Coding RNA Search

Pla1-C0000037_E23

Sequence:


               
               CCCGCGGTGGCGGCCGCGGCTCGAGGTGATACTGACCCCCACTTCCAGGACGTGCTCATG
CAACTAGCCAAGGCTGTGGCAAGCGCTGCAGCTGCCCTGGTCCTCAAGGCCAAGAGTGTG
GCCCAGCGCACAGAGGACTCGGGGCTTCAGACCCAGGTTATTGCTGCGGCAACACAGTGT
GCCCTGTCCACCTCCCAGCTGGTGGCCTGTACCAAGGTGGTGGCACCTACGATCAGCTCC
CCTGTCTGCCAAGAACAGCTGGTGGAAGCCGGTCGACTAGTGGCCAAAGCCGTGGAGGGC
TGTGTGTCCGCCTCCCAGGCCGCCACAGAAGATGGGCAGCTGTTGCGAGGAGTGGGAGCG
GCAGCCACAGCTGTCACCCAGGCCCTGAATGAGCTGTTGCAGCACGTGAGGGCCCACGCC
ACAGGGGCCGGGCCTGCTGGCCGCTATGACCAGGCCACTGACACCATTCTCACTGTCACT
GAGAACATCTTTAGCTCCATGGGCGATGCTGGTGAGATGGTGCGACAGGCGCGCATCCTG
GCCCAAGCCACCTCTGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCGGTGGCGGCCGCGGCTCGAGGTGATACTGACCCCCACTTCCAGGACGTGCTCATG
CAACTAGCCAAGGCTGTGGCAAGCGCTGCAGCTGCCCTGGTCCTCAAGGCCAAGAGTGTG
GCCCAGCGCACAGAGGACTCGGGGCTTCAGACCCAGGTTATTGCTGCGGCAACACAGTGT
GCCCTGTCCACCTCCCAGCTGGTGGCCTGTACCAAGGTGGTGGCACCTACGATCAGCTCC
CCTGTCTGCCAAGAACAGCTGGTGGAAGCCGGTCGACTAGTGGCCAAAGCCGTGGAGGGC
TGTGTGTCCGCCTCCCAGGCCGCCACAGAAGATGGGCAGCTGTTGCGAGGAGTGGGAGCG
GCAGCCACAGCTGTCACCCAGGCCCTGAATGAGCTGTTGCAGCACGTGAGGGCCCACGCC
ACAGGGGCCGGGCCTGCTGGCCGCTATGACCAGGCCACTGACACCATTCTCACTGTCACT
GAGAACATCTTTAGCTCCATGGGCGATGCTGGTGAGATGGTGCGACAGGCGCGCATCCTG
GCCCAAGCCACCTCTGACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               215-333, - strand, RNAz p=0.848498

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-333, - strand, RNAz p=0.848498

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               215-516, gnl|bosTau2|chr10 (33315277-33314976)
               

               
               215-516, gnl|Hg17|chr15 (60787991-60788292)
               

               
               215-516, gnl|Mm7|chr9 (67378087-67377786)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-516, gnl|bosTau2|chr10 (33315277-33314976)
               

               
               215-516, gnl|Hg17|chr15 (60787991-60788292)
               

               
               215-516, gnl|Mm7|chr9 (67378087-67377786)

	215-516, gnl\|bosTau2\|chr10 (33315277-33314976)
	215-516, gnl\|Hg17\|chr15 (60787991-60788292)
	215-516, gnl\|Mm7\|chr9 (67378087-67377786)