Non-Coding RNA Search

Pla1-C0000038_M23

Sequence:


               
               GTTAATTAATGCCTCTGAGACTCTTCTGAAAAGACTTGGTTGAGCTTTGGGATTAATGTC
CACTAGCACTTTGTTCAGCACACAGATATTTGATAACTTGATGACTAATAAGAAAACTCT
TATTAAATTGTGTTGAATGGGTGGATGACTATAAAAGAAATACATTTTTTTTTCCTTTGG
GAGAAACAAATCACACTCAAGTTAGAGTTACCAAAGTGTTATACAGTAAAAATTGGAAAG
TATGATTGATAATGACAATAATTTTGATTTTCTCTTAGAATGGAAATCTTTTAATGACTT
TCTTTTACACTGTTCATGACATCCTGCCTGAAAATCTGGGAAGGAATTTCTGCTTATCAA
GTTCTATTAAATAAGCTTTGTAATTATAGAGAATGAAAGTCTTTGGAGATCTCAGAATGA
ATAGAAAAAACATAAAAATATTTTTCATTTTGTCTCCAGGGTCTCTATGGGAATAAAGAG
GATGTCTTCCTTAGTGTTCCTTGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAATTAATGCCTCTGAGACTCTTCTGAAAAGACTTGGTTGAGCTTTGGGATTAATGTC
CACTAGCACTTTGTTCAGCACACAGATATTTGATAACTTGATGACTAATAAGAAAACTCT
TATTAAATTGTGTTGAATGGGTGGATGACTATAAAAGAAATACATTTTTTTTTCCTTTGG
GAGAAACAAATCACACTCAAGTTAGAGTTACCAAAGTGTTATACAGTAAAAATTGGAAAG
TATGATTGATAATGACAATAATTTTGATTTTCTCTTAGAATGGAAATCTTTTAATGACTT
TCTTTTACACTGTTCATGACATCCTGCCTGAAAATCTGGGAAGGAATTTCTGCTTATCAA
GTTCTATTAAATAAGCTTTGTAATTATAGAGAATGAAAGTCTTTGGAGATCTCAGAATGA
ATAGAAAAAACATAAAAATATTTTTCATTTTGTCTCCAGGGTCTCTATGGGAATAAAGAG
GATGTCTTCCTTAGTGTTCCTTGCATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-507, + strand, RNAz p=0.524541

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-507, + strand, RNAz p=0.524541

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               396-506, + strand, RNAmicro p=0.948993

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               396-506, + strand, RNAmicro p=0.948993

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               21-507, gnl|bosTau2|chr29 (18423325-18422835)
               

               
               21-507, gnl|Hg17|chr11 (18383828-18385287)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-507, gnl|bosTau2|chr29 (18423325-18422835)
               

               
               21-507, gnl|Hg17|chr11 (18383828-18385287)

	21-507, gnl\|bosTau2\|chr29 (18423325-18422835)
	21-507, gnl\|Hg17\|chr11 (18383828-18385287)