Non-Coding RNA Search

Pla1-C0000044_E08

Sequence:


               
               TAATCATTCAGTTTCTCTTCAGGAGCCAGGCTGGAATCTGCTTCCAGAGAAGACAACCGG
ATATGCCTGCTGGCCACATGATCCCAGAGAGACTGACCTCAGATGCAGCAACTGTTCCAT
GAAAATTATGAACACAATCGAAAAGGTTATATCCAAGACCTTCACAATAGCAAAATCCAT
GCAGCCATAACACTTCATCCAAACAAAAGACCCGCCTACCAATACAGGCTTCATAATTAC
ATGCTCAGCCGCAAAATTTCTGAACTTCGCTACCGCACCATCCAGCTCCACCGGGAGAGC
GCTCTGATGAGCAAGCTCAGTAACAGCGAAGTGAGCAAAGAAGACCAGCAGCTGGGAGTG
ATGCCTTCTTTCAACCACTTCCAGCCTCGAGAGAGAGATGAAGTGATAGAATGGGAGTTC
CTGACGGGAAAGCTCCTTTACTCGGCATCTGAGAACCAGCCTCCTCGACAAACATCAACA
GCATTCTGAGAACAGCACTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATCATTCAGTTTCTCTTCAGGAGCCAGGCTGGAATCTGCTTCCAGAGAAGACAACCGG
ATATGCCTGCTGGCCACATGATCCCAGAGAGACTGACCTCAGATGCAGCAACTGTTCCAT
GAAAATTATGAACACAATCGAAAAGGTTATATCCAAGACCTTCACAATAGCAAAATCCAT
GCAGCCATAACACTTCATCCAAACAAAAGACCCGCCTACCAATACAGGCTTCATAATTAC
ATGCTCAGCCGCAAAATTTCTGAACTTCGCTACCGCACCATCCAGCTCCACCGGGAGAGC
GCTCTGATGAGCAAGCTCAGTAACAGCGAAGTGAGCAAAGAAGACCAGCAGCTGGGAGTG
ATGCCTTCTTTCAACCACTTCCAGCCTCGAGAGAGAGATGAAGTGATAGAATGGGAGTTC
CTGACGGGAAAGCTCCTTTACTCGGCATCTGAGAACCAGCCTCCTCGACAAACATCAACA
GCATTCTGAGAACAGCACTGGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16974773|gb|AAL32463.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16974773|gb|AAL32463.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               338-457, + strand, RNAz p=0.521927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-457, + strand, RNAz p=0.521927

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               99-503, gnl|bosTau2|chr7 (19831374-19831779)
               

               
               99-503, gnl|Hg17|chr5 (129547817-129548222)
               

               
               99-503, gnl|Mm7|chr18 (59798220-59798625)
               


               
               100-468, gnl|bosTau2|chr21 (2823093-2823461)
               

               
               100-468, gnl|Hg17|chr15 (99536711-99536343)
               

               
               100-468, gnl|Mm7|chr7 (62028796-62029164)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-503, gnl|bosTau2|chr7 (19831374-19831779)
               

               
               99-503, gnl|Hg17|chr5 (129547817-129548222)
               

               
               99-503, gnl|Mm7|chr18 (59798220-59798625)
               


               
               100-468, gnl|bosTau2|chr21 (2823093-2823461)
               

               
               100-468, gnl|Hg17|chr15 (99536711-99536343)
               

               
               100-468, gnl|Mm7|chr7 (62028796-62029164)

	99-503, gnl\|bosTau2\|chr7 (19831374-19831779)
	99-503, gnl\|Hg17\|chr5 (129547817-129548222)
	99-503, gnl\|Mm7\|chr18 (59798220-59798625)

	100-468, gnl\|bosTau2\|chr21 (2823093-2823461)
	100-468, gnl\|Hg17\|chr15 (99536711-99536343)
	100-468, gnl\|Mm7\|chr7 (62028796-62029164)