Non-Coding RNA Search

Pla1-C0000044_L09

Sequence:


               
               GCGGCTCGAGCTTTAATTACTTTCTTGTGATCAGAATTAGAGTAACCAGTAATTAGAGTG
TTTTTGTTTGTTTTCTTTGGCAAGAATATTGCCTAGTGTAGTGATGTGTGCTTCCTGCTG
TATCACATCAAGAGGAATATAATGTCATTTTCCTCCCATTATTGGTAGTACTAAGTTAAT
CTTTTGGTCCACATGGAAGAATTCTGCACATTTTAAATTCCGTCTGCTGCAGCTGTGGCA
CAGGTCGCAACTGCAACTCTGCACCTCGGGTTTGACCCCTTGGCCCCGAGCACTTCCAAC
AAAAAATCAAGGGTACAAATAGTTGCAAAAGATGTAATATTCTGTGTATGTTAAGGGTTA
ACACTTTAATGGAGCAGTTACTTCATCTTTTAAATGTGTCTAGTGGAATCAAAATATCTT
GGCATTTGATTCAGTCACCTTTATTCACTTAGAAAATGTGTGAACAGACTTTTCAACGAT
TGGACATTGTTTTTGTTTTTGTTTTGGTGAACTTACATTGCTTCTGCCAGTTTTTAATGT
AG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCTTTAATTACTTTCTTGTGATCAGAATTAGAGTAACCAGTAATTAGAGTG
TTTTTGTTTGTTTTCTTTGGCAAGAATATTGCCTAGTGTAGTGATGTGTGCTTCCTGCTG
TATCACATCAAGAGGAATATAATGTCATTTTCCTCCCATTATTGGTAGTACTAAGTTAAT
CTTTTGGTCCACATGGAAGAATTCTGCACATTTTAAATTCCGTCTGCTGCAGCTGTGGCA
CAGGTCGCAACTGCAACTCTGCACCTCGGGTTTGACCCCTTGGCCCCGAGCACTTCCAAC
AAAAAATCAAGGGTACAAATAGTTGCAAAAGATGTAATATTCTGTGTATGTTAAGGGTTA
ACACTTTAATGGAGCAGTTACTTCATCTTTTAAATGTGTCTAGTGGAATCAAAATATCTT
GGCATTTGATTCAGTCACCTTTATTCACTTAGAAAATGTGTGAACAGACTTTTCAACGAT
TGGACATTGTTTTTGTTTTTGTTTTGGTGAACTTACATTGCTTCTGCCAGTTTTTAATGT
AG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               84-188, - strand, RNAz p=0.772042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-188, - strand, RNAz p=0.772042

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               10-188, gnl|bosTau2|chr4 (47662791-47662612)
               

               
               10-188, gnl|canFam2|chr18 (12797280-12797136)
               

               
               10-188, gnl|hg17|chr7 (39893967-39894120)
               

               
               10-188, gnl|loxAfr1|scaffold_19176 (27036-26887)
               

               
               10-188, gnl|mm7|chr13 (17087140-17086980)
               

               
               10-188, gnl|panTro1|chr6 (44356376-44356223)
               

               
               10-188, gnl|rheMac2|chr3 (86278912-86278766)
               

               
               10-188, gnl|rn3|chr17 (55230347-55230501)
               


               
               321-542, gnl|bosTau2|chr4 (47662533-47662323)
               

               
               321-542, gnl|Hg17|chr7 (39894176-39894360)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-188, gnl|bosTau2|chr4 (47662791-47662612)
               

               
               10-188, gnl|canFam2|chr18 (12797280-12797136)
               

               
               10-188, gnl|hg17|chr7 (39893967-39894120)
               

               
               10-188, gnl|loxAfr1|scaffold_19176 (27036-26887)
               

               
               10-188, gnl|mm7|chr13 (17087140-17086980)
               

               
               10-188, gnl|panTro1|chr6 (44356376-44356223)
               

               
               10-188, gnl|rheMac2|chr3 (86278912-86278766)
               

               
               10-188, gnl|rn3|chr17 (55230347-55230501)
               


               
               321-542, gnl|bosTau2|chr4 (47662533-47662323)
               

               
               321-542, gnl|Hg17|chr7 (39894176-39894360)

	10-188, gnl\|bosTau2\|chr4 (47662791-47662612)
	10-188, gnl\|canFam2\|chr18 (12797280-12797136)
	10-188, gnl\|hg17\|chr7 (39893967-39894120)
	10-188, gnl\|loxAfr1\|scaffold_19176 (27036-26887)
	10-188, gnl\|mm7\|chr13 (17087140-17086980)
	10-188, gnl\|panTro1\|chr6 (44356376-44356223)
	10-188, gnl\|rheMac2\|chr3 (86278912-86278766)
	10-188, gnl\|rn3\|chr17 (55230347-55230501)

	321-542, gnl\|bosTau2\|chr4 (47662533-47662323)
	321-542, gnl\|Hg17\|chr7 (39894176-39894360)