Non-Coding RNA Search

Pla1-C0000045_F08

Sequence:


               
               CGGCCGCGGCTCGAGGTCCCCTTGGCAGGCTCCTGGGATGCCAGAGCCAGAGGCCACACG
GTACCCCCAAGGGCAGTGGAGGCGCCGGGCCGGCGAGCTCGGAGCGCACGCCTTTTCTTT
CTTCGTCGCACCCGGACTTTAAGGAAGAGAAAGAGAGGCTCTTGCCCGCGGGCTCGCCAT
CGCCTGGGCCCGAGCGGCCGCGGGACGGCGGCGCCGAGCGGCAGGCGGGCGCGGCCAAGA
AGAAGACGCGCACGGTCTTCTCGCGCAGCCAGGTGTACCAGCTCGAGTCCACCTTCGACA
TGAAGCGCTACCTGAGCAGCTCGGAGCGCGCCTGCCTCGCCTCCAGCCTGCAGCTCACCG
AGACCCAGGTCAAGACTTGGTTCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTCTCCG
CCGAGCTGGAGGCGGCCAACATGGCGCACGCGTCGGCGCAGACTCTGGTGGGGATGCCGC
TCGTGTTCCGGGACAGCTCGTTGCTGCGCGTGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGCGGCTCGAGGTCCCCTTGGCAGGCTCCTGGGATGCCAGAGCCAGAGGCCACACG
GTACCCCCAAGGGCAGTGGAGGCGCCGGGCCGGCGAGCTCGGAGCGCACGCCTTTTCTTT
CTTCGTCGCACCCGGACTTTAAGGAAGAGAAAGAGAGGCTCTTGCCCGCGGGCTCGCCAT
CGCCTGGGCCCGAGCGGCCGCGGGACGGCGGCGCCGAGCGGCAGGCGGGCGCGGCCAAGA
AGAAGACGCGCACGGTCTTCTCGCGCAGCCAGGTGTACCAGCTCGAGTCCACCTTCGACA
TGAAGCGCTACCTGAGCAGCTCGGAGCGCGCCTGCCTCGCCTCCAGCCTGCAGCTCACCG
AGACCCAGGTCAAGACTTGGTTCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTCTCCG
CCGAGCTGGAGGCGGCCAACATGGCGCACGCGTCGGCGCAGACTCTGGTGGGGATGCCGC
TCGTGTTCCGGGACAGCTCGTTGCTGCGCGTGCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61814841|ref|XP_603984.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61814841|ref|XP_603984.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               99-215, - strand, RNAz p=0.606816
               

               
               336-455, - strand, RNAz p=0.704754

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               99-215, - strand, RNAz p=0.606816
               

               
               336-455, - strand, RNAz p=0.704754

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               60-514, gnl|bosTau2|chr26 (27814931-27814474)
               

               
               60-514, gnl|Hg17|chr10 (124899075-124899529)
               

               
               60-514, gnl|Mm7|chr7 (127912144-127912598)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-514, gnl|bosTau2|chr26 (27814931-27814474)
               

               
               60-514, gnl|Hg17|chr10 (124899075-124899529)
               

               
               60-514, gnl|Mm7|chr7 (127912144-127912598)

	99-215, - strand, RNAz p=0.606816
	336-455, - strand, RNAz p=0.704754

	60-514, gnl\|bosTau2\|chr26 (27814931-27814474)
	60-514, gnl\|Hg17\|chr10 (124899075-124899529)
	60-514, gnl\|Mm7\|chr7 (127912144-127912598)