Non-Coding RNA Search

Pla1-C0000046_L19

Sequence:


               
               CTCCTACAATCCATTTCTGTATTACCCTATTAGTGGGAAAATTAGGACTGTATGATCTTT
AACCAGATCAGAAGCAGATATGGGCATGTGCTGGTTACCCAGCTGCTTCTGCATCATACC
ACCCTCACATGTGCTGCCTGATAAGAGTCTGTGAGGAGTAAGTTATTCCTTACTCGAGGT
CTTAGATAGATGCTCTTATTGATTTTTGGCCCAGAGGGTCTTTCCCCTTAGAGGAGGGTT
TTCACATAATCTTCTCTTTTCCCAGCATCTAATTAGGTGTTTAGGGCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTACAATCCATTTCTGTATTACCCTATTAGTGGGAAAATTAGGACTGTATGATCTTT
AACCAGATCAGAAGCAGATATGGGCATGTGCTGGTTACCCAGCTGCTTCTGCATCATACC
ACCCTCACATGTGCTGCCTGATAAGAGTCTGTGAGGAGTAAGTTATTCCTTACTCGAGGT
CTTAGATAGATGCTCTTATTGATTTTTGGCCCAGAGGGTCTTTCCCCTTAGAGGAGGGTT
TTCACATAATCTTCTCTTTTCCCAGCATCTAATTAGGTGTTTAGGGCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               5-230, + strand, RNAz p=0.997555

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-230, + strand, RNAz p=0.997555

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               5-291, gnl|bosTau2|chr9 (13625715-13625999)
               

               
               5-291, gnl|canFam2|chr1 (67270031-67270215)
               

               
               5-291, gnl|dasNov1|scaffold_5742 (32378-32188)
               

               
               5-291, gnl|echTel1|scaffold_308036 (167104-167246)
               

               
               5-291, gnl|hg17|chr6 (125620777-125620978)
               

               
               5-291, gnl|Hg17|chr6 (125620776-125621072)
               

               
               5-291, gnl|loxAfr1|scaffold_37194 (37676-37882)
               

               
               5-291, gnl|mm7|chr10 (31118126-31117973)
               

               
               5-291, gnl|panTro1|chr5 (128150962-128151163)
               

               
               5-291, gnl|rheMac2|chr4 (138684124-138683923)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-291, gnl|bosTau2|chr9 (13625715-13625999)
               

               
               5-291, gnl|canFam2|chr1 (67270031-67270215)
               

               
               5-291, gnl|dasNov1|scaffold_5742 (32378-32188)
               

               
               5-291, gnl|echTel1|scaffold_308036 (167104-167246)
               

               
               5-291, gnl|hg17|chr6 (125620777-125620978)
               

               
               5-291, gnl|Hg17|chr6 (125620776-125621072)
               

               
               5-291, gnl|loxAfr1|scaffold_37194 (37676-37882)
               

               
               5-291, gnl|mm7|chr10 (31118126-31117973)
               

               
               5-291, gnl|panTro1|chr5 (128150962-128151163)
               

               
               5-291, gnl|rheMac2|chr4 (138684124-138683923)

	5-291, gnl\|bosTau2\|chr9 (13625715-13625999)
	5-291, gnl\|canFam2\|chr1 (67270031-67270215)
	5-291, gnl\|dasNov1\|scaffold_5742 (32378-32188)
	5-291, gnl\|echTel1\|scaffold_308036 (167104-167246)
	5-291, gnl\|hg17\|chr6 (125620777-125620978)
	5-291, gnl\|Hg17\|chr6 (125620776-125621072)
	5-291, gnl\|loxAfr1\|scaffold_37194 (37676-37882)
	5-291, gnl\|mm7\|chr10 (31118126-31117973)
	5-291, gnl\|panTro1\|chr5 (128150962-128151163)
	5-291, gnl\|rheMac2\|chr4 (138684124-138683923)