Non-Coding RNA Search

Pla1-C0000046_N03

Sequence:


               
               CCGTAAGTAGACCAAACAAAGGGAGGGTGGATGGTGCTTCTTTCTAAGAGGGAGCAGCCT
GCTCCTTGGAGTCAGGGGTCTCTGAGACTCTGCCACGTACGTCTTAGTCCCGCTGACATA
TTACTCCCACATCCTTGTGGGTAGTGAAGTTAAAATTTTAAAAATGTTCTTTGATCTTCC
ACCCACTGATCTGGTAGACAAGTTCAATACTGCAGCTGGGAGAAAGGGAGGGTGAAATAT
AATTTATACTGTTAAAAAAAAAAAGCCTCAAAAACCACAGTCTCTATGTCTGCGCTAGGT
TAGAAGTTATGACAAAAAAGTGGCTTCTGTTTTAGAATGCGTTGTTAGCCATCACACTTT
ATAAATTACATGGCGTTACTATTTGTGACCTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTAAGTAGACCAAACAAAGGGAGGGTGGATGGTGCTTCTTTCTAAGAGGGAGCAGCCT
GCTCCTTGGAGTCAGGGGTCTCTGAGACTCTGCCACGTACGTCTTAGTCCCGCTGACATA
TTACTCCCACATCCTTGTGGGTAGTGAAGTTAAAATTTTAAAAATGTTCTTTGATCTTCC
ACCCACTGATCTGGTAGACAAGTTCAATACTGCAGCTGGGAGAAAGGGAGGGTGAAATAT
AATTTATACTGTTAAAAAAAAAAAGCCTCAAAAACCACAGTCTCTATGTCTGCGCTAGGT
TAGAAGTTATGACAAAAAAGTGGCTTCTGTTTTAGAATGCGTTGTTAGCCATCACACTTT
ATAAATTACATGGCGTTACTATTTGTGACCTACTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               43-198, + strand, RNAz p=0.972401
               

               
               197-309, - strand, RNAz p=0.631109

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-198, + strand, RNAz p=0.972401
               

               
               197-309, - strand, RNAz p=0.631109

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               5-395, gnl|bosTau2|chr27 (25914769-25915165)
               

               
               5-395, gnl|canFam2|chr16 (24545130-24545534)
               

               
               5-395, gnl|galGal2|chrZ (26433008-26433428)
               

               
               5-395, gnl|hg17|chr8 (18623691-18624102)
               

               
               5-395, gnl|Hg17|chr8 (18624118-18623724)
               

               
               5-395, gnl|loxAfr1|scaffold_1195 (108758-109179)
               

               
               5-395, gnl|mm7|chr8 (66304052-66304453)
               

               
               5-395, gnl|Mm7|chr8 (66304469-66304084)
               

               
               5-395, gnl|monDom2|scaffold_1 (77392898-77393296)
               

               
               5-395, gnl|oryCun1|scaffold_185315 (13066-13462)
               

               
               5-395, gnl|panTro1|chr7 (19422761-19423172)
               

               
               5-395, gnl|rheMac2|chr8 (18607389-18607800)
               

               
               5-395, gnl|rn3|chr16 (23508565-23508168)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-395, gnl|bosTau2|chr27 (25914769-25915165)
               

               
               5-395, gnl|canFam2|chr16 (24545130-24545534)
               

               
               5-395, gnl|galGal2|chrZ (26433008-26433428)
               

               
               5-395, gnl|hg17|chr8 (18623691-18624102)
               

               
               5-395, gnl|Hg17|chr8 (18624118-18623724)
               

               
               5-395, gnl|loxAfr1|scaffold_1195 (108758-109179)
               

               
               5-395, gnl|mm7|chr8 (66304052-66304453)
               

               
               5-395, gnl|Mm7|chr8 (66304469-66304084)
               

               
               5-395, gnl|monDom2|scaffold_1 (77392898-77393296)
               

               
               5-395, gnl|oryCun1|scaffold_185315 (13066-13462)
               

               
               5-395, gnl|panTro1|chr7 (19422761-19423172)
               

               
               5-395, gnl|rheMac2|chr8 (18607389-18607800)
               

               
               5-395, gnl|rn3|chr16 (23508565-23508168)

	43-198, + strand, RNAz p=0.972401
	197-309, - strand, RNAz p=0.631109

	5-395, gnl\|bosTau2\|chr27 (25914769-25915165)
	5-395, gnl\|canFam2\|chr16 (24545130-24545534)
	5-395, gnl\|galGal2\|chrZ (26433008-26433428)
	5-395, gnl\|hg17\|chr8 (18623691-18624102)
	5-395, gnl\|Hg17\|chr8 (18624118-18623724)
	5-395, gnl\|loxAfr1\|scaffold_1195 (108758-109179)
	5-395, gnl\|mm7\|chr8 (66304052-66304453)
	5-395, gnl\|Mm7\|chr8 (66304469-66304084)
	5-395, gnl\|monDom2\|scaffold_1 (77392898-77393296)
	5-395, gnl\|oryCun1\|scaffold_185315 (13066-13462)
	5-395, gnl\|panTro1\|chr7 (19422761-19423172)
	5-395, gnl\|rheMac2\|chr8 (18607389-18607800)
	5-395, gnl\|rn3\|chr16 (23508565-23508168)