Non-Coding RNA Search

Pla1-C0000048_M14

Sequence:


               
               AAGATCAACTGGAAGATTTGAAAAAAAGAAATCAGAACTCTCAGATATCCACTGAGAAAG
TGAATCAACTCCAGAGACAGCTGGATGAAACCAATGCTTTGCTGCGAACAGAATCTGATA
CTGCGGCCCGGTTAAGAAAAACCCAGGCAGAAAGTTCAAAACAGATTCAGCAGCTGGAAT
CTAACAATAGAGATCTACAAGATAAAAATTGCCTGCTGGAAACTGCCAAGTTAAAACTTG
AAAAGGATTTTATCAATCTGCAGTCAGTTCTAGAATCTGAAAGGAGGGACCGAACCCATG
GATCAGAGATTATTAATGATTTACAAGGTAGAATATCTGGCCTGGAAGAAGATTTAAAGA
ATGGCAAAATCTTATTAACCAAAGTAGAGATGGAGAAGAGACAACTACAGGAGAGATTTA
CTGATTTGGAAAAGGAGAAGAATACATGGAAATAGATATGACATACCAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATCAACTGGAAGATTTGAAAAAAAGAAATCAGAACTCTCAGATATCCACTGAGAAAG
TGAATCAACTCCAGAGACAGCTGGATGAAACCAATGCTTTGCTGCGAACAGAATCTGATA
CTGCGGCCCGGTTAAGAAAAACCCAGGCAGAAAGTTCAAAACAGATTCAGCAGCTGGAAT
CTAACAATAGAGATCTACAAGATAAAAATTGCCTGCTGGAAACTGCCAAGTTAAAACTTG
AAAAGGATTTTATCAATCTGCAGTCAGTTCTAGAATCTGAAAGGAGGGACCGAACCCATG
GATCAGAGATTATTAATGATTTACAAGGTAGAATATCTGGCCTGGAAGAAGATTTAAAGA
ATGGCAAAATCTTATTAACCAAAGTAGAGATGGAGAAGAGACAACTACAGGAGAGATTTA
CTGATTTGGAAAAGGAGAAGAATACATGGAAATAGATATGACATACCAACTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61829796|ref|XP_605133.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61829796|ref|XP_605133.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               77-315, - strand, RNAz p=0.756833

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-315, - strand, RNAz p=0.756833

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               77-330, gnl|bosTau2|chr11 (65348963-65349216)
               

               
               77-330, gnl|canFam2|chr17 (10939666-10939936)
               

               
               77-330, gnl|danRer3|chrNA (58678456-58678202)
               

               
               77-330, gnl|dasNov1|scaffold_44396 (42408-42139)
               

               
               77-330, gnl|echTel1|scaffold_310314 (52981-52722)
               

               
               77-330, gnl|fr1|chrUn (263028058-263028325)
               

               
               77-330, gnl|galGal2|chr3 (95450420-95450679)
               

               
               77-330, gnl|hg17|chr2 (11305562-11305832)
               

               
               77-330, gnl|Hg17|chr2 (11305814-11305561)
               

               
               77-330, gnl|loxAfr1|scaffold_65614 (4429-4695)
               

               
               77-330, gnl|mm7|chr12 (17013463-17013193)
               

               
               77-330, gnl|Mm7|chr12 (17013209-17013462)
               

               
               77-330, gnl|monDom2|scaffold_1 (97023851-97023583)
               

               
               77-330, gnl|oryCun1|scaffold_194601 (137453-137723)
               

               
               77-330, gnl|panTro1|chr12 (12022621-12022891)
               

               
               77-330, gnl|rheMac2|chr13 (11295227-11295497)
               

               
               77-330, gnl|rn3|chr6 (40651275-40651005)
               

               
               77-330, gnl|tetNig1|chr10 (1204816-1204572)
               

               
               77-330, gnl|xenTro1|scaffold_1042 (156285-156555)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-330, gnl|bosTau2|chr11 (65348963-65349216)
               

               
               77-330, gnl|canFam2|chr17 (10939666-10939936)
               

               
               77-330, gnl|danRer3|chrNA (58678456-58678202)
               

               
               77-330, gnl|dasNov1|scaffold_44396 (42408-42139)
               

               
               77-330, gnl|echTel1|scaffold_310314 (52981-52722)
               

               
               77-330, gnl|fr1|chrUn (263028058-263028325)
               

               
               77-330, gnl|galGal2|chr3 (95450420-95450679)
               

               
               77-330, gnl|hg17|chr2 (11305562-11305832)
               

               
               77-330, gnl|Hg17|chr2 (11305814-11305561)
               

               
               77-330, gnl|loxAfr1|scaffold_65614 (4429-4695)
               

               
               77-330, gnl|mm7|chr12 (17013463-17013193)
               

               
               77-330, gnl|Mm7|chr12 (17013209-17013462)
               

               
               77-330, gnl|monDom2|scaffold_1 (97023851-97023583)
               

               
               77-330, gnl|oryCun1|scaffold_194601 (137453-137723)
               

               
               77-330, gnl|panTro1|chr12 (12022621-12022891)
               

               
               77-330, gnl|rheMac2|chr13 (11295227-11295497)
               

               
               77-330, gnl|rn3|chr6 (40651275-40651005)
               

               
               77-330, gnl|tetNig1|chr10 (1204816-1204572)
               

               
               77-330, gnl|xenTro1|scaffold_1042 (156285-156555)

	77-330, gnl\|bosTau2\|chr11 (65348963-65349216)
	77-330, gnl\|canFam2\|chr17 (10939666-10939936)
	77-330, gnl\|danRer3\|chrNA (58678456-58678202)
	77-330, gnl\|dasNov1\|scaffold_44396 (42408-42139)
	77-330, gnl\|echTel1\|scaffold_310314 (52981-52722)
	77-330, gnl\|fr1\|chrUn (263028058-263028325)
	77-330, gnl\|galGal2\|chr3 (95450420-95450679)
	77-330, gnl\|hg17\|chr2 (11305562-11305832)
	77-330, gnl\|Hg17\|chr2 (11305814-11305561)
	77-330, gnl\|loxAfr1\|scaffold_65614 (4429-4695)
	77-330, gnl\|mm7\|chr12 (17013463-17013193)
	77-330, gnl\|Mm7\|chr12 (17013209-17013462)
	77-330, gnl\|monDom2\|scaffold_1 (97023851-97023583)
	77-330, gnl\|oryCun1\|scaffold_194601 (137453-137723)
	77-330, gnl\|panTro1\|chr12 (12022621-12022891)
	77-330, gnl\|rheMac2\|chr13 (11295227-11295497)
	77-330, gnl\|rn3\|chr6 (40651275-40651005)
	77-330, gnl\|tetNig1\|chr10 (1204816-1204572)
	77-330, gnl\|xenTro1\|scaffold_1042 (156285-156555)