Non-Coding RNA Search

Pla1-C0000934_G03

Sequence:


               
               GGAACGAGTTGGTATGCCCGATGCCAAGGCCATCGCTGCCGAGCAGAGAGGAACAGACAT
GCTAGCAGATGGCGGTGACGGGGGAGAATTTGATAGAGAAGATGAAGACCCAGAATACAA
ACCAACCAGAACGCCATTCAAGGATGAAATAGATGAATTTGCAAATTCTCCTCCAGAAGA
TAAGGAGGAACCCATGGAAATACGTGCCCCAGGCAAGCACGGCGAGAGCAGCGCTGAGTT
CGGCCAGCTCTACTGGCCCAACACCTCCACCCTGACCACGCGCCTGCGCAGGCTCATTAC
TGCCTATCAGCGCAGCTATAAAAGGCAGCAAATGCGGCAGGAGGCTCTGATGAAGACCGA
CCGGCGGAGACGGCGGCCGCGGGAGGAAGTGCGGGCCCTGGAAGCGGAAAGGGGAGCTAT
CATATCCGAGAAACGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACGAGTTGGTATGCCCGATGCCAAGGCCATCGCTGCCGAGCAGAGAGGAACAGACAT
GCTAGCAGATGGCGGTGACGGGGGAGAATTTGATAGAGAAGATGAAGACCCAGAATACAA
ACCAACCAGAACGCCATTCAAGGATGAAATAGATGAATTTGCAAATTCTCCTCCAGAAGA
TAAGGAGGAACCCATGGAAATACGTGCCCCAGGCAAGCACGGCGAGAGCAGCGCTGAGTT
CGGCCAGCTCTACTGGCCCAACACCTCCACCCTGACCACGCGCCTGCGCAGGCTCATTAC
TGCCTATCAGCGCAGCTATAAAAGGCAGCAAATGCGGCAGGAGGCTCTGATGAAGACCGA
CCGGCGGAGACGGCGGCCGCGGGAGGAAGTGCGGGCCCTGGAAGCGGAAAGGGGAGCTAT
CATATCCGAGAAACGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-325, - strand, RNAz p=0.836272

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-325, - strand, RNAz p=0.836272

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               220-400, - strand, RNAmicro p=0.999986

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               220-400, - strand, RNAmicro p=0.999986

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               207-437, gnl|bosTau2|chr14 (14904666-14904436)
               

               
               207-437, gnl|Hg17|chr8 (61927126-61927356)
               

               
               207-437, gnl|Mm7|chr4 (8781206-8781436)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-437, gnl|bosTau2|chr14 (14904666-14904436)
               

               
               207-437, gnl|Hg17|chr8 (61927126-61927356)
               

               
               207-437, gnl|Mm7|chr4 (8781206-8781436)

	207-437, gnl\|bosTau2\|chr14 (14904666-14904436)
	207-437, gnl\|Hg17\|chr8 (61927126-61927356)
	207-437, gnl\|Mm7\|chr4 (8781206-8781436)