Non-Coding RNA Search

Pla1-C0000934_H22

Sequence:


               
               AATGGAGCAAGAAGCCTAGGCCGAGGGGTAGCCCTCACCCCTCTGATCGAGGTCCTGCCG
CTTACGCCGCCAGGAGCCTCCTTCCCCGGACCTAGTGCGTTCGAGTGCCCCGGTGGCCTG
GGCCTCGCGAGTGGAATGGTAGCCGAGGCCCAGGGCCTCGGGTTTCGGGGCACCCCGTGA
AGGGAACTGGGGAACCTCGCGGGACTCCCCCCGACTCCAGGAGCGGAAAACCCCAGCGAG
CTGCAGGCAAATGTGCAATACCAACATGTCTGTGTCCACTGATGGTGCTGTAAGCACCTC
ACAGATTCCAGCTTCGGAACAGGAGACCCTGGTCAGACCAAAGCCATTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGAGCAAGAAGCCTAGGCCGAGGGGTAGCCCTCACCCCTCTGATCGAGGTCCTGCCG
CTTACGCCGCCAGGAGCCTCCTTCCCCGGACCTAGTGCGTTCGAGTGCCCCGGTGGCCTG
GGCCTCGCGAGTGGAATGGTAGCCGAGGCCCAGGGCCTCGGGTTTCGGGGCACCCCGTGA
AGGGAACTGGGGAACCTCGCGGGACTCCCCCCGACTCCAGGAGCGGAAAACCCCAGCGAG
CTGCAGGCAAATGTGCAATACCAACATGTCTGTGTCCACTGATGGTGCTGTAAGCACCTC
ACAGATTCCAGCTTCGGAACAGGAGACCCTGGTCAGACCAAAGCCATTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29125743|emb|CAD79456.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29125743|emb|CAD79456.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-195, - strand, RNAz p=0.974222
               

               
               19-129, - strand, RNAz p=0.575108

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-195, - strand, RNAz p=0.974222
               

               
               19-129, - strand, RNAz p=0.575108

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-236, gnl|bosTau2|chr5 (29471685-29471931)
               

               
               1-236, gnl|canFam2|chr2 (9980296-9980016)
               

               
               1-236, gnl|dasNov1|scaffold_29083 (6627-6923)
               

               
               1-236, gnl|echTel1|scaffold_97581 (4094-3801)
               

               
               1-236, gnl|hg17|chr12 (67488247-67488539)
               

               
               1-236, gnl|Hg17|chr12 (67488294-67488524)
               

               
               1-236, gnl|loxAfr1|scaffold_22475 (63784-63522)
               

               
               1-236, gnl|mm7|chr10 (117222087-117221924)
               

               
               1-236, gnl|monDom2|scaffold_169 (744182-743902)
               

               
               1-236, gnl|oryCun1|scaffold_82954 (7024-6732)
               

               
               1-236, gnl|panTro1|chr10 (69018669-69018961)
               

               
               1-236, gnl|rheMac2|chr11 (65798091-65798383)
               

               
               1-236, gnl|rn3|chr7 (57041655-57041488)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-236, gnl|bosTau2|chr5 (29471685-29471931)
               

               
               1-236, gnl|canFam2|chr2 (9980296-9980016)
               

               
               1-236, gnl|dasNov1|scaffold_29083 (6627-6923)
               

               
               1-236, gnl|echTel1|scaffold_97581 (4094-3801)
               

               
               1-236, gnl|hg17|chr12 (67488247-67488539)
               

               
               1-236, gnl|Hg17|chr12 (67488294-67488524)
               

               
               1-236, gnl|loxAfr1|scaffold_22475 (63784-63522)
               

               
               1-236, gnl|mm7|chr10 (117222087-117221924)
               

               
               1-236, gnl|monDom2|scaffold_169 (744182-743902)
               

               
               1-236, gnl|oryCun1|scaffold_82954 (7024-6732)
               

               
               1-236, gnl|panTro1|chr10 (69018669-69018961)
               

               
               1-236, gnl|rheMac2|chr11 (65798091-65798383)
               

               
               1-236, gnl|rn3|chr7 (57041655-57041488)

	1-195, - strand, RNAz p=0.974222
	19-129, - strand, RNAz p=0.575108

	1-236, gnl\|bosTau2\|chr5 (29471685-29471931)
	1-236, gnl\|canFam2\|chr2 (9980296-9980016)
	1-236, gnl\|dasNov1\|scaffold_29083 (6627-6923)
	1-236, gnl\|echTel1\|scaffold_97581 (4094-3801)
	1-236, gnl\|hg17\|chr12 (67488247-67488539)
	1-236, gnl\|Hg17\|chr12 (67488294-67488524)
	1-236, gnl\|loxAfr1\|scaffold_22475 (63784-63522)
	1-236, gnl\|mm7\|chr10 (117222087-117221924)
	1-236, gnl\|monDom2\|scaffold_169 (744182-743902)
	1-236, gnl\|oryCun1\|scaffold_82954 (7024-6732)
	1-236, gnl\|panTro1\|chr10 (69018669-69018961)
	1-236, gnl\|rheMac2\|chr11 (65798091-65798383)
	1-236, gnl\|rn3\|chr7 (57041655-57041488)