Non-Coding RNA Search

Pla1-C0000934_H24

Sequence:


               
               CCGCGGTGGCGGCCGCGGCTCGAGCTCACCCTCTAACACTCCACACACCTCTGCCAACAT
CGTGATGACTCCACAAGGGCAGTTGCTCACCTTAAAAGGTCCCCTCTTCTCAGGACCAGT
GGTTACTGTTTCTCCTGCTGTCTTAGAAGCAGATCTGAAACCTCAAGTCACTAGCAGTGC
TGTGGCTCAGTCAGAAAACGACGACTTATTTATGATGCCAAGAATTGTTAATGTGACATC
ACTGGCCACAGAGGGAGGTTTGGTAGATATGGGTGGCAGCAAATATCCTCATGAAGTTCC
TGATGGCAAGCCACCTGACCACCTGAAAAATCCTGTCAGGAATGAAGATAACTCCTGTGA
AGATTTGGGTAGAATCTCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGTGGCGGCCGCGGCTCGAGCTCACCCTCTAACACTCCACACACCTCTGCCAACAT
CGTGATGACTCCACAAGGGCAGTTGCTCACCTTAAAAGGTCCCCTCTTCTCAGGACCAGT
GGTTACTGTTTCTCCTGCTGTCTTAGAAGCAGATCTGAAACCTCAAGTCACTAGCAGTGC
TGTGGCTCAGTCAGAAAACGACGACTTATTTATGATGCCAAGAATTGTTAATGTGACATC
ACTGGCCACAGAGGGAGGTTTGGTAGATATGGGTGGCAGCAAATATCCTCATGAAGTTCC
TGATGGCAAGCCACCTGACCACCTGAAAAATCCTGTCAGGAATGAAGATAACTCCTGTGA
AGATTTGGGTAGAATCTCTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               25-143, - strand, RNAz p=0.655873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-143, - strand, RNAz p=0.655873

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               25-194, gnl|bosTau2|chr10 (25183079-25182910)
               

               
               25-194, gnl|canFam2|chr30 (11791491-11791697)
               

               
               25-194, gnl|dasNov1|scaffold_5042 (69584-69378)
               

               
               25-194, gnl|echTel1|scaffold_310315 (55343-55134)
               

               
               25-194, gnl|galGal2|chr5 (22274367-22274562)
               

               
               25-194, gnl|hg17|chr15 (39844365-39844574)
               

               
               25-194, gnl|Hg17|chr15 (39844383-39844552)
               

               
               25-194, gnl|loxAfr1|scaffold_61217 (8379-8171)
               

               
               25-194, gnl|mm7|chr2 (119702632-119702835)
               

               
               25-194, gnl|Mm7|chr2 (119702650-119702819)
               

               
               25-194, gnl|monDom2|scaffold_12 (155289-155083)
               

               
               25-194, gnl|panTro1|chr16 (39819051-39819260)
               

               
               25-194, gnl|rheMac2|chr7 (20183898-20184107)
               

               
               25-194, gnl|rn3|chr3 (106368665-106368868)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-194, gnl|bosTau2|chr10 (25183079-25182910)
               

               
               25-194, gnl|canFam2|chr30 (11791491-11791697)
               

               
               25-194, gnl|dasNov1|scaffold_5042 (69584-69378)
               

               
               25-194, gnl|echTel1|scaffold_310315 (55343-55134)
               

               
               25-194, gnl|galGal2|chr5 (22274367-22274562)
               

               
               25-194, gnl|hg17|chr15 (39844365-39844574)
               

               
               25-194, gnl|Hg17|chr15 (39844383-39844552)
               

               
               25-194, gnl|loxAfr1|scaffold_61217 (8379-8171)
               

               
               25-194, gnl|mm7|chr2 (119702632-119702835)
               

               
               25-194, gnl|Mm7|chr2 (119702650-119702819)
               

               
               25-194, gnl|monDom2|scaffold_12 (155289-155083)
               

               
               25-194, gnl|panTro1|chr16 (39819051-39819260)
               

               
               25-194, gnl|rheMac2|chr7 (20183898-20184107)
               

               
               25-194, gnl|rn3|chr3 (106368665-106368868)

	25-194, gnl\|bosTau2\|chr10 (25183079-25182910)
	25-194, gnl\|canFam2\|chr30 (11791491-11791697)
	25-194, gnl\|dasNov1\|scaffold_5042 (69584-69378)
	25-194, gnl\|echTel1\|scaffold_310315 (55343-55134)
	25-194, gnl\|galGal2\|chr5 (22274367-22274562)
	25-194, gnl\|hg17\|chr15 (39844365-39844574)
	25-194, gnl\|Hg17\|chr15 (39844383-39844552)
	25-194, gnl\|loxAfr1\|scaffold_61217 (8379-8171)
	25-194, gnl\|mm7\|chr2 (119702632-119702835)
	25-194, gnl\|Mm7\|chr2 (119702650-119702819)
	25-194, gnl\|monDom2\|scaffold_12 (155289-155083)
	25-194, gnl\|panTro1\|chr16 (39819051-39819260)
	25-194, gnl\|rheMac2\|chr7 (20183898-20184107)
	25-194, gnl\|rn3\|chr3 (106368665-106368868)