Non-Coding RNA Search

Pla1-C0000935_A18

Sequence:


               
               CATTGAGGTATTTTATGCAAAGATTTTTTTCAAGTATTTTATAAAATATTAGAGTTTGAT
GAAGATCGTGGTAGAGTAAAAATTCCAGATATTAGATGCCTGGAATGTTCACAAAATGTG
AAGAAATAATTCTATCTTAAGACAACCGTTTGAGAAAAATTCATGGTATGGAATATCTAC
CTTAAACATCAATAGAGACACCAATCCTACTGAAATAATTCATGGCTTCTAAAAATCAGT
GACAAAGCAAGAGTAAATGGCGTATCACACAATGCAATTAATATGTTTCTGTCTTTTCTC
TTTAAACTGTGGTTGAATTTTCATGGAAATAAATAAAAAACATAGCAAAAGTAGGGTGTG
TTCATGAATCTAATGAGCAACAAATTCTAAAATAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTGAGGTATTTTATGCAAAGATTTTTTTCAAGTATTTTATAAAATATTAGAGTTTGAT
GAAGATCGTGGTAGAGTAAAAATTCCAGATATTAGATGCCTGGAATGTTCACAAAATGTG
AAGAAATAATTCTATCTTAAGACAACCGTTTGAGAAAAATTCATGGTATGGAATATCTAC
CTTAAACATCAATAGAGACACCAATCCTACTGAAATAATTCATGGCTTCTAAAAATCAGT
GACAAAGCAAGAGTAAATGGCGTATCACACAATGCAATTAATATGTTTCTGTCTTTTCTC
TTTAAACTGTGGTTGAATTTTCATGGAAATAAATAAAAAACATAGCAAAAGTAGGGTGTG
TTCATGAATCTAATGAGCAACAAATTCTAAAATAATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               8-125, + strand, RNAz p=0.852885

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-125, + strand, RNAz p=0.852885

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               8-392, gnl|bosTau2|chr9 (7368667-7369047)
               

               
               8-392, gnl|canFam2|chr12 (39944442-39944727)
               

               
               8-392, gnl|echTel1|scaffold_308364 (118614-118334)
               

               
               8-392, gnl|hg17|chr6 (76059149-76059424)
               

               
               8-392, gnl|Hg17|chr6 (76059540-76059172)
               

               
               8-392, gnl|loxAfr1|scaffold_4387 (20726-20997)
               

               
               8-392, gnl|mm7|chr9 (79878378-79878647)
               

               
               8-392, gnl|Mm7|chr9 (79878814-79878401)
               

               
               8-392, gnl|oryCun1|scaffold_132474 (6626-6899)
               

               
               8-392, gnl|panTro1|chr5 (77413947-77414222)
               

               
               8-392, gnl|rheMac2|chr4 (71434886-71435168)
               

               
               8-392, gnl|rn3|chr8 (84878027-84878293)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-392, gnl|bosTau2|chr9 (7368667-7369047)
               

               
               8-392, gnl|canFam2|chr12 (39944442-39944727)
               

               
               8-392, gnl|echTel1|scaffold_308364 (118614-118334)
               

               
               8-392, gnl|hg17|chr6 (76059149-76059424)
               

               
               8-392, gnl|Hg17|chr6 (76059540-76059172)
               

               
               8-392, gnl|loxAfr1|scaffold_4387 (20726-20997)
               

               
               8-392, gnl|mm7|chr9 (79878378-79878647)
               

               
               8-392, gnl|Mm7|chr9 (79878814-79878401)
               

               
               8-392, gnl|oryCun1|scaffold_132474 (6626-6899)
               

               
               8-392, gnl|panTro1|chr5 (77413947-77414222)
               

               
               8-392, gnl|rheMac2|chr4 (71434886-71435168)
               

               
               8-392, gnl|rn3|chr8 (84878027-84878293)

	8-392, gnl\|bosTau2\|chr9 (7368667-7369047)
	8-392, gnl\|canFam2\|chr12 (39944442-39944727)
	8-392, gnl\|echTel1\|scaffold_308364 (118614-118334)
	8-392, gnl\|hg17\|chr6 (76059149-76059424)
	8-392, gnl\|Hg17\|chr6 (76059540-76059172)
	8-392, gnl\|loxAfr1\|scaffold_4387 (20726-20997)
	8-392, gnl\|mm7\|chr9 (79878378-79878647)
	8-392, gnl\|Mm7\|chr9 (79878814-79878401)
	8-392, gnl\|oryCun1\|scaffold_132474 (6626-6899)
	8-392, gnl\|panTro1\|chr5 (77413947-77414222)
	8-392, gnl\|rheMac2\|chr4 (71434886-71435168)
	8-392, gnl\|rn3\|chr8 (84878027-84878293)