Non-Coding RNA Search

Pla1-C0000937_N04

Sequence:


               
               CCAGGGTGTCTGAGTGTGGTGGGGGGTTGGGGGAAGCAGGGACAGGGGGGAGCAGGAGGC
CCTGTGACTCTCCCTCCTCCCCCCTCCCACCCCAGCCTTCCTTCCCAACCTTTGATTTCT
TCTCGCAGGTGACCACAGACGCGATGGGGGAGACAGGATCTCTTATGTGCTTCCATAACC
TTTTTCCTTATACTCCTCACCCTTTCCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGGTGTCTGAGTGTGGTGGGGGGTTGGGGGAAGCAGGGACAGGGGGGAGCAGGAGGC
CCTGTGACTCTCCCTCCTCCCCCCTCCCACCCCAGCCTTCCTTCCCAACCTTTGATTTCT
TCTCGCAGGTGACCACAGACGCGATGGGGGAGACAGGATCTCTTATGTGCTTCCATAACC
TTTTTCCTTATACTCCTCACCCTTTCCTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               28-176, - strand, RNAz p=0.999717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-176, - strand, RNAz p=0.999717

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               30-128, - strand, RNAmicro p=0.998015
               

               
               31-101, + strand, RNAmicro p=0.983119

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               30-128, - strand, RNAmicro p=0.998015
               

               
               31-101, + strand, RNAmicro p=0.983119

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               28-211, gnl|bosTau2|chr7 (7632733-7632911)
               

               
               28-211, gnl|canFam2|chr20 (51365278-51364609)
               

               
               28-211, gnl|echTel1|scaffold_126709 (232-898)
               

               
               28-211, gnl|hg17|chr19 (14141276-14141944)
               

               
               28-211, gnl|Hg17|chr19 (14141523-14141348)
               

               
               28-211, gnl|mm7|chr8 (82502615-82502096)
               

               
               28-211, gnl|Mm7|chr8 (82502361-82502540)
               

               
               28-211, gnl|monDom2|scaffold_159 (1406776-1407475)
               

               
               28-211, gnl|panTro1|chr20 (14776694-14777362)
               

               
               28-211, gnl|rheMac2|chr19 (13859576-13860243)
               

               
               28-211, gnl|rn3|chr19 (25912609-25913199)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-211, gnl|bosTau2|chr7 (7632733-7632911)
               

               
               28-211, gnl|canFam2|chr20 (51365278-51364609)
               

               
               28-211, gnl|echTel1|scaffold_126709 (232-898)
               

               
               28-211, gnl|hg17|chr19 (14141276-14141944)
               

               
               28-211, gnl|Hg17|chr19 (14141523-14141348)
               

               
               28-211, gnl|mm7|chr8 (82502615-82502096)
               

               
               28-211, gnl|Mm7|chr8 (82502361-82502540)
               

               
               28-211, gnl|monDom2|scaffold_159 (1406776-1407475)
               

               
               28-211, gnl|panTro1|chr20 (14776694-14777362)
               

               
               28-211, gnl|rheMac2|chr19 (13859576-13860243)
               

               
               28-211, gnl|rn3|chr19 (25912609-25913199)

	30-128, - strand, RNAmicro p=0.998015
	31-101, + strand, RNAmicro p=0.983119

	28-211, gnl\|bosTau2\|chr7 (7632733-7632911)
	28-211, gnl\|canFam2\|chr20 (51365278-51364609)
	28-211, gnl\|echTel1\|scaffold_126709 (232-898)
	28-211, gnl\|hg17\|chr19 (14141276-14141944)
	28-211, gnl\|Hg17\|chr19 (14141523-14141348)
	28-211, gnl\|mm7\|chr8 (82502615-82502096)
	28-211, gnl\|Mm7\|chr8 (82502361-82502540)
	28-211, gnl\|monDom2\|scaffold_159 (1406776-1407475)
	28-211, gnl\|panTro1\|chr20 (14776694-14777362)
	28-211, gnl\|rheMac2\|chr19 (13859576-13860243)
	28-211, gnl\|rn3\|chr19 (25912609-25913199)