Non-Coding RNA Search

Pla1-C0000940_P07

Sequence:


               
               TACACATGCTCCTCTGCCTTCCTTAATCTCCCCGTGAGTAAATTGGGCTTCTCACCATCT
CTGGGAAGGTATGATTCCCCAGCCCAGTTACTGCATTAACTTCAACTTCCTCAATCCTCT
GACATTTCTAAATAAAAAAGATTTGGAACATGAAAGGGGCAGCAAATTAAATGGTATTTC
CCCCCATTTATGCTCCTGGAGGAGTTCTAATGACTGTTTTTCCCTCCCGGCCACATGGGG
CCTCATTGAGATAATAGGATTTGCAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACACATGCTCCTCTGCCTTCCTTAATCTCCCCGTGAGTAAATTGGGCTTCTCACCATCT
CTGGGAAGGTATGATTCCCCAGCCCAGTTACTGCATTAACTTCAACTTCCTCAATCCTCT
GACATTTCTAAATAAAAAAGATTTGGAACATGAAAGGGGCAGCAAATTAAATGGTATTTC
CCCCCATTTATGCTCCTGGAGGAGTTCTAATGACTGTTTTTCCCTCCCGGCCACATGGGG
CCTCATTGAGATAATAGGATTTGCAAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               95-213, - strand, RNAz p=0.956012

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-213, - strand, RNAz p=0.956012

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               20-268, gnl|bosTau2|chr19 (35830519-35830268)
               

               
               20-268, gnl|canFam2|chr9 (26781647-26781075)
               

               
               20-268, gnl|echTel1|scaffold_309423 (45632-45077)
               

               
               20-268, gnl|hg17|chr17 (34198918-34199491)
               

               
               20-268, gnl|Hg17|chr17 (34199529-34199278)
               

               
               20-268, gnl|loxAfr1|scaffold_1668 (86628-86067)
               

               
               20-268, gnl|mm7|chr11 (97842690-97843243)
               

               
               20-268, gnl|Mm7|chr11 (97843286-97843037)
               

               
               20-268, gnl|oryCun1|scaffold_163548 (11881-12428)
               

               
               20-268, gnl|panTro1|chr19 (37415850-37416423)
               

               
               20-268, gnl|rheMac2|chr16 (48816960-48817536)
               

               
               20-268, gnl|rn3|chr10 (86494036-86494609)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-268, gnl|bosTau2|chr19 (35830519-35830268)
               

               
               20-268, gnl|canFam2|chr9 (26781647-26781075)
               

               
               20-268, gnl|echTel1|scaffold_309423 (45632-45077)
               

               
               20-268, gnl|hg17|chr17 (34198918-34199491)
               

               
               20-268, gnl|Hg17|chr17 (34199529-34199278)
               

               
               20-268, gnl|loxAfr1|scaffold_1668 (86628-86067)
               

               
               20-268, gnl|mm7|chr11 (97842690-97843243)
               

               
               20-268, gnl|Mm7|chr11 (97843286-97843037)
               

               
               20-268, gnl|oryCun1|scaffold_163548 (11881-12428)
               

               
               20-268, gnl|panTro1|chr19 (37415850-37416423)
               

               
               20-268, gnl|rheMac2|chr16 (48816960-48817536)
               

               
               20-268, gnl|rn3|chr10 (86494036-86494609)

	20-268, gnl\|bosTau2\|chr19 (35830519-35830268)
	20-268, gnl\|canFam2\|chr9 (26781647-26781075)
	20-268, gnl\|echTel1\|scaffold_309423 (45632-45077)
	20-268, gnl\|hg17\|chr17 (34198918-34199491)
	20-268, gnl\|Hg17\|chr17 (34199529-34199278)
	20-268, gnl\|loxAfr1\|scaffold_1668 (86628-86067)
	20-268, gnl\|mm7\|chr11 (97842690-97843243)
	20-268, gnl\|Mm7\|chr11 (97843286-97843037)
	20-268, gnl\|oryCun1\|scaffold_163548 (11881-12428)
	20-268, gnl\|panTro1\|chr19 (37415850-37416423)
	20-268, gnl\|rheMac2\|chr16 (48816960-48817536)
	20-268, gnl\|rn3\|chr10 (86494036-86494609)