Non-Coding RNA Search

Pla1-C0001061_O24

Sequence:


               
               TCACTCATTATTTTATATCTAATGCATGTGGGAGAATTTCTGGATGGGCTTTTGGATGGG
GAAAATGCATCCTATACACCCATAAAAAGAGTTTTGATGGAAGAGCCAGGATATAAGATG
ATTCCCTGACTTCCATTCAAGTTTTCTTTCTACTTGTTCAACATGGCTAGTAAACCCCAC
ACATGTCACTCAGATCTCCTGGTGGCTCACAGACCTAAAGAAGTTCCTTTCCTGCTTTCG
CAAGTCCTGCCAAAAAAATCTGCTTGTAAAGACTTGAAATACAACAGTGCCTTTTCTGAC
AGCCTTGTTTACCCATAACTCTCAACTATTGGTTCTGGGCCTCAAGATGCACAATACAAT
TTCCAGCAAAGGTCAGTGATAAAACTCTAAAACATTCTAGAATAGTGCATTATGAGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTCATTATTTTATATCTAATGCATGTGGGAGAATTTCTGGATGGGCTTTTGGATGGG
GAAAATGCATCCTATACACCCATAAAAAGAGTTTTGATGGAAGAGCCAGGATATAAGATG
ATTCCCTGACTTCCATTCAAGTTTTCTTTCTACTTGTTCAACATGGCTAGTAAACCCCAC
ACATGTCACTCAGATCTCCTGGTGGCTCACAGACCTAAAGAAGTTCCTTTCCTGCTTTCG
CAAGTCCTGCCAAAAAAATCTGCTTGTAAAGACTTGAAATACAACAGTGCCTTTTCTGAC
AGCCTTGTTTACCCATAACTCTCAACTATTGGTTCTGGGCCTCAAGATGCACAATACAAT
TTCCAGCAAAGGTCAGTGATAAAACTCTAAAACATTCTAGAATAGTGCATTATGAGCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-147, - strand, RNAz p=0.722337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-147, - strand, RNAz p=0.722337

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-212, gnl|bosTau2|chr22 (21045099-21045309)
               

               
               1-212, gnl|canFam2|chr20 (22188938-22188697)
               

               
               1-212, gnl|dasNov1|scaffold_25996 (3357-3079)
               

               
               1-212, gnl|echTel1|scaffold_301037 (8119-7941)
               

               
               1-212, gnl|hg17|chr3 (73109096-73109365)
               

               
               1-212, gnl|Hg17|chr3 (73109127-73109364)
               

               
               1-212, gnl|loxAfr1|scaffold_5066 (32085-31844)
               

               
               1-212, gnl|mm7|chr6 (100897568-100897767)
               

               
               1-212, gnl|oryCun1|scaffold_163989 (2296-2576)
               

               
               1-212, gnl|panTro1|chr2 (75079657-75079925)
               

               
               1-212, gnl|rheMac2|chr2 (63243929-63243660)
               

               
               1-212, gnl|rn3|chr4 (135943791-135943999)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-212, gnl|bosTau2|chr22 (21045099-21045309)
               

               
               1-212, gnl|canFam2|chr20 (22188938-22188697)
               

               
               1-212, gnl|dasNov1|scaffold_25996 (3357-3079)
               

               
               1-212, gnl|echTel1|scaffold_301037 (8119-7941)
               

               
               1-212, gnl|hg17|chr3 (73109096-73109365)
               

               
               1-212, gnl|Hg17|chr3 (73109127-73109364)
               

               
               1-212, gnl|loxAfr1|scaffold_5066 (32085-31844)
               

               
               1-212, gnl|mm7|chr6 (100897568-100897767)
               

               
               1-212, gnl|oryCun1|scaffold_163989 (2296-2576)
               

               
               1-212, gnl|panTro1|chr2 (75079657-75079925)
               

               
               1-212, gnl|rheMac2|chr2 (63243929-63243660)
               

               
               1-212, gnl|rn3|chr4 (135943791-135943999)

	1-212, gnl\|bosTau2\|chr22 (21045099-21045309)
	1-212, gnl\|canFam2\|chr20 (22188938-22188697)
	1-212, gnl\|dasNov1\|scaffold_25996 (3357-3079)
	1-212, gnl\|echTel1\|scaffold_301037 (8119-7941)
	1-212, gnl\|hg17\|chr3 (73109096-73109365)
	1-212, gnl\|Hg17\|chr3 (73109127-73109364)
	1-212, gnl\|loxAfr1\|scaffold_5066 (32085-31844)
	1-212, gnl\|mm7\|chr6 (100897568-100897767)
	1-212, gnl\|oryCun1\|scaffold_163989 (2296-2576)
	1-212, gnl\|panTro1\|chr2 (75079657-75079925)
	1-212, gnl\|rheMac2\|chr2 (63243929-63243660)
	1-212, gnl\|rn3\|chr4 (135943791-135943999)