Non-Coding RNA Search

Pla1-C0001062_K06

Sequence:


               
               CTCAAGAGGGTATGAAAGGAAAGATGTCTTAAAAATTATGGTGATTTAATTTTATTTTGC
CCTAGAATGACATTCTCTTGAGTATTTGTGAAAATGAAGATGAATATGCAAGGATACATT
CGGTTGATTTTGTGCCAGATGGCCAGTTGCAGAGGCTGAACTAAGCTGAACTGATTGATT
CGTTTTTGCCATATTGCATGCTGGCGTTTACCACAGTTCACATCATTCAAATCGTAACAT
ATTTGGTAGGTTTGGTTTTTTTCTAACCATTAAAAAAAACTTTGGGGGGATGACCTCTGC
CTTAAAATATATCTTTTTCTTTGTTCTATCAGATGGTCGACTCTGCTTAATAGCTTCTTA
AATTTAACTTTCATAGAAAAAAAATTTATGCTTTAAATTTACTATGTTGTGCTAAGATAA
ATTATTCATTTTCAGTGATAAGTATTTCAAGTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAGAGGGTATGAAAGGAAAGATGTCTTAAAAATTATGGTGATTTAATTTTATTTTGC
CCTAGAATGACATTCTCTTGAGTATTTGTGAAAATGAAGATGAATATGCAAGGATACATT
CGGTTGATTTTGTGCCAGATGGCCAGTTGCAGAGGCTGAACTAAGCTGAACTGATTGATT
CGTTTTTGCCATATTGCATGCTGGCGTTTACCACAGTTCACATCATTCAAATCGTAACAT
ATTTGGTAGGTTTGGTTTTTTTCTAACCATTAAAAAAAACTTTGGGGGGATGACCTCTGC
CTTAAAATATATCTTTTTCTTTGTTCTATCAGATGGTCGACTCTGCTTAATAGCTTCTTA
AATTTAACTTTCATAGAAAAAAAATTTATGCTTTAAATTTACTATGTTGTGCTAAGATAA
ATTATTCATTTTCAGTGATAAGTATTTCAAGTAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.698973

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.698973

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-454, gnl|bosTau2|chr14 (18541338-18541791)
               

               
               1-454, gnl|Hg17|chr8 (65356379-65355910)
               

               
               1-454, gnl|Mm7|chr3 (17358656-17358157)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr14 (18541338-18541791)
               

               
               1-454, gnl|Hg17|chr8 (65356379-65355910)
               

               
               1-454, gnl|Mm7|chr3 (17358656-17358157)

	1-454, gnl\|bosTau2\|chr14 (18541338-18541791)
	1-454, gnl\|Hg17\|chr8 (65356379-65355910)
	1-454, gnl\|Mm7\|chr3 (17358656-17358157)