Non-Coding RNA Search

Pla1-C0001063_D12

Sequence:


               
               TGTCCCAACCCCCTGCCTTGAACTGTGGAACCTGAAGCAGTTTCTCTAATGCCGTAGCAG
CCTCCTCCTTCAGCATCTCTAATCTGATGAGAGGTCCACCAAGCAGGCGCTGTCCTCATG
CGAGGCCACAGGGTGCAGACTGGCCAGGACAGGCTGTGGCAGGGGGCCTGGGCGGTCCAG
GGAAGGGAGGGGTTTAGGTCACAGAAGAGTCTGGGCAGATGGGGCTTCAGGTCCACAGGG
ACTGGGCAGTGCTTGGGGGTCATCTGGTAACATACCAAGTGTGACCTTAGAAGAACTTGT
CCTCCAAGGAGATAATAATGAGCTGACGATGCAGAGGTAAGTAAGACAAGGTGTGCTTTC
CAGGGCACCAGGAGGGCTCTGCCCACCTTCAGACGTTCCCTGTACCTGTTACAGATGCTG
CTCTAAGGAACACCCCCCACCCCCCGCCCTGACAGGATGGGCCTTTTCTCCCCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCCCAACCCCCTGCCTTGAACTGTGGAACCTGAAGCAGTTTCTCTAATGCCGTAGCAG
CCTCCTCCTTCAGCATCTCTAATCTGATGAGAGGTCCACCAAGCAGGCGCTGTCCTCATG
CGAGGCCACAGGGTGCAGACTGGCCAGGACAGGCTGTGGCAGGGGGCCTGGGCGGTCCAG
GGAAGGGAGGGGTTTAGGTCACAGAAGAGTCTGGGCAGATGGGGCTTCAGGTCCACAGGG
ACTGGGCAGTGCTTGGGGGTCATCTGGTAACATACCAAGTGTGACCTTAGAAGAACTTGT
CCTCCAAGGAGATAATAATGAGCTGACGATGCAGAGGTAAGTAAGACAAGGTGTGCTTTC
CAGGGCACCAGGAGGGCTCTGCCCACCTTCAGACGTTCCCTGTACCTGTTACAGATGCTG
CTCTAAGGAACACCCCCCACCCCCCGCCCTGACAGGATGGGCCTTTTCTCCCCTCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               369-474, - strand, RNAz p=0.955483

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               369-474, - strand, RNAz p=0.955483

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               2-173, gnl|bosTau2|chr10 (8967286-8967115)
               

               
               2-173, gnl|dasNov1|scaffold_195366 (3998-3431)
               

               
               2-173, gnl|hg17|chr2 (95370542-95371254)
               

               
               2-173, gnl|Hg17|chr2 (95370663-95370835)
               

               
               2-173, gnl|mm7|chr2 (127274883-127274296)
               

               
               2-173, gnl|panTro1|chr12 (98356038-98356750)
               

               
               2-173, gnl|rheMac2|chr13 (96369007-96369669)
               

               
               2-173, gnl|rn3|chr3 (114943332-114942745)
               


               
               224-474, gnl|bosTau2|chr10 (8967028-8966782)
               

               
               224-474, gnl|dasNov1|scaffold_195366 (3998-3431)
               

               
               224-474, gnl|hg17|chr2 (95370542-95371254)
               

               
               224-474, gnl|Hg17|chr2 (95370950-95371194)
               

               
               224-474, gnl|mm7|chr2 (127274883-127274296)
               

               
               224-474, gnl|panTro1|chr12 (98356038-98356750)
               

               
               224-474, gnl|rheMac2|chr13 (96369007-96369669)
               

               
               224-474, gnl|rn3|chr3 (114943332-114942745)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-173, gnl|bosTau2|chr10 (8967286-8967115)
               

               
               2-173, gnl|dasNov1|scaffold_195366 (3998-3431)
               

               
               2-173, gnl|hg17|chr2 (95370542-95371254)
               

               
               2-173, gnl|Hg17|chr2 (95370663-95370835)
               

               
               2-173, gnl|mm7|chr2 (127274883-127274296)
               

               
               2-173, gnl|panTro1|chr12 (98356038-98356750)
               

               
               2-173, gnl|rheMac2|chr13 (96369007-96369669)
               

               
               2-173, gnl|rn3|chr3 (114943332-114942745)
               


               
               224-474, gnl|bosTau2|chr10 (8967028-8966782)
               

               
               224-474, gnl|dasNov1|scaffold_195366 (3998-3431)
               

               
               224-474, gnl|hg17|chr2 (95370542-95371254)
               

               
               224-474, gnl|Hg17|chr2 (95370950-95371194)
               

               
               224-474, gnl|mm7|chr2 (127274883-127274296)
               

               
               224-474, gnl|panTro1|chr12 (98356038-98356750)
               

               
               224-474, gnl|rheMac2|chr13 (96369007-96369669)
               

               
               224-474, gnl|rn3|chr3 (114943332-114942745)

	2-173, gnl\|bosTau2\|chr10 (8967286-8967115)
	2-173, gnl\|dasNov1\|scaffold_195366 (3998-3431)
	2-173, gnl\|hg17\|chr2 (95370542-95371254)
	2-173, gnl\|Hg17\|chr2 (95370663-95370835)
	2-173, gnl\|mm7\|chr2 (127274883-127274296)
	2-173, gnl\|panTro1\|chr12 (98356038-98356750)
	2-173, gnl\|rheMac2\|chr13 (96369007-96369669)
	2-173, gnl\|rn3\|chr3 (114943332-114942745)

	224-474, gnl\|bosTau2\|chr10 (8967028-8966782)
	224-474, gnl\|dasNov1\|scaffold_195366 (3998-3431)
	224-474, gnl\|hg17\|chr2 (95370542-95371254)
	224-474, gnl\|Hg17\|chr2 (95370950-95371194)
	224-474, gnl\|mm7\|chr2 (127274883-127274296)
	224-474, gnl\|panTro1\|chr12 (98356038-98356750)
	224-474, gnl\|rheMac2\|chr13 (96369007-96369669)
	224-474, gnl\|rn3\|chr3 (114943332-114942745)