Non-Coding RNA Search

Pla1-C0001063_H15

Sequence:


               
               CAGCTCCTTGTCAGACTCCACAAGGACGAGACTGAGCAGCGAGTCTGACTGCTCCTCCGA
GGGCTCCAGCGTGGAGTCGCTGAAGCCGGTGCGGAAGCGGCAGGAGCACCGCAAGAGGGG
CCTGCAGAGCACGCTGCCCGACCGGAAGGGCCCCCTCCACGCCGGCGGGGACGGCGCCGT
GCCCAAGCTGGACCGGGAGGGCAAGGTTGTCAAGAAACACAAGACGAAGCACAAGCACAG
GACCAAGGAGAAGGGGCTGTGCGCCGTCAGCCAGGAGCTGGCGCTGAAGGGCTTCGCCTA
CGAGTACGAGGACGCCAAGCCCAGGCCGGACAAGGGCGCCCCCCCGGACGGCGACGCCCC
CGCCGAGGGCAGGCTGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTCCTTGTCAGACTCCACAAGGACGAGACTGAGCAGCGAGTCTGACTGCTCCTCCGA
GGGCTCCAGCGTGGAGTCGCTGAAGCCGGTGCGGAAGCGGCAGGAGCACCGCAAGAGGGG
CCTGCAGAGCACGCTGCCCGACCGGAAGGGCCCCCTCCACGCCGGCGGGGACGGCGCCGT
GCCCAAGCTGGACCGGGAGGGCAAGGTTGTCAAGAAACACAAGACGAAGCACAAGCACAG
GACCAAGGAGAAGGGGCTGTGCGCCGTCAGCCAGGAGCTGGCGCTGAAGGGCTTCGCCTA
CGAGTACGAGGACGCCAAGCCCAGGCCGGACAAGGGCGCCCCCCCGGACGGCGACGCCCC
CGCCGAGGGCAGGCTGAAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-156, - strand, RNAz p=0.998261
               

               
               197-316, - strand, RNAz p=0.543967

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, - strand, RNAz p=0.998261
               

               
               197-316, - strand, RNAz p=0.543967

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               11-109, DA697149 NT2NE2 Homo sapiens cDNA clone NT2NE2018283 5', mRNA 
(dbj|DA697149.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, DB367119 NT2RP2 Homo sapiens cDNA clone NT2RP2006361 3', mRNA 
(dbj|DB367119.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, K-EST0214016 B2N807043 Homo sapiens cDNA clone B2N807043-11-A04 5', 
(gb|CB155647.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, 17000427621751 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN399768.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, 17000600181335 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN399769.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, HHAGE013729 Human liver regeneration after partial hepatectomy Homo 
(gb|DW412999.1|), blast E-value=5e-26, identity=90.91%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               11-109, DA697149 NT2NE2 Homo sapiens cDNA clone NT2NE2018283 5', mRNA 
(dbj|DA697149.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, DB367119 NT2RP2 Homo sapiens cDNA clone NT2RP2006361 3', mRNA 
(dbj|DB367119.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, K-EST0214016 B2N807043 Homo sapiens cDNA clone B2N807043-11-A04 5', 
(gb|CB155647.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, 17000427621751 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN399768.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, 17000600181335 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN399769.1|), blast E-value=5e-26, identity=90.91% 
               

               
               11-109, HHAGE013729 Human liver regeneration after partial hepatectomy Homo 
(gb|DW412999.1|), blast E-value=5e-26, identity=90.91%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-380, gnl|bosTau2|chr18 (12221600-12221979)
               

               
               1-380, gnl|Hg17|chr16 (87878765-87878395)
               

               
               1-380, gnl|Mm7|chr8 (121537058-121536676)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-380, gnl|bosTau2|chr18 (12221600-12221979)
               

               
               1-380, gnl|Hg17|chr16 (87878765-87878395)
               

               
               1-380, gnl|Mm7|chr8 (121537058-121536676)

	1-156, - strand, RNAz p=0.998261
	197-316, - strand, RNAz p=0.543967

	11-109, DA697149 NT2NE2 Homo sapiens cDNA clone NT2NE2018283 5', mRNA (dbj\|DA697149.1\|), blast E-value=5e-26, identity=90.91%
	11-109, DB367119 NT2RP2 Homo sapiens cDNA clone NT2RP2006361 3', mRNA (dbj\|DB367119.1\|), blast E-value=5e-26, identity=90.91%
	11-109, K-EST0214016 B2N807043 Homo sapiens cDNA clone B2N807043-11-A04 5', (gb\|CB155647.1\|), blast E-value=5e-26, identity=90.91%
	11-109, 17000427621751 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN399768.1\|), blast E-value=5e-26, identity=90.91%
	11-109, 17000600181335 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN399769.1\|), blast E-value=5e-26, identity=90.91%
	11-109, HHAGE013729 Human liver regeneration after partial hepatectomy Homo (gb\|DW412999.1\|), blast E-value=5e-26, identity=90.91%

	1-380, gnl\|bosTau2\|chr18 (12221600-12221979)
	1-380, gnl\|Hg17\|chr16 (87878765-87878395)
	1-380, gnl\|Mm7\|chr8 (121537058-121536676)