Non-Coding RNA Search

Pla1-C0001063_O24

Sequence:


               
               GTGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCCCACGGGCCACCAAATA
TGATGCAGTCCAGCCTCATGGGAATTCATGGCAACATGAACAACCAACAGGCTGGTAGTT
CTGGGGTTCCTCAGGTGAACCTGGGCAACATGCAAGGCCAGCCCCAGCAGGGCCCAGCAT
CTCAGCTGATGAGCATGCACCAGCAGATCGTGCCCTCCCAGAGCCAGATGGTCCAGCAAC
AAGGAACCTTGAACCCTCAGAACCCTATGATCCTTTCAAGGGCCCAGCTTATGCCACAGG
GTCAGATGATGGTGAATCCTCAGAGCCAAAATCTTGGGCCTTCACCCCAGAGGATGACCC
CACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAATGATGGCGCCGCATAACCAGATGA
TGGGGCCTCAGGGGCAAGTCTTGCTCCAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCCCACGGGCCACCAAATA
TGATGCAGTCCAGCCTCATGGGAATTCATGGCAACATGAACAACCAACAGGCTGGTAGTT
CTGGGGTTCCTCAGGTGAACCTGGGCAACATGCAAGGCCAGCCCCAGCAGGGCCCAGCAT
CTCAGCTGATGAGCATGCACCAGCAGATCGTGCCCTCCCAGAGCCAGATGGTCCAGCAAC
AAGGAACCTTGAACCCTCAGAACCCTATGATCCTTTCAAGGGCCCAGCTTATGCCACAGG
GTCAGATGATGGTGAATCCTCAGAGCCAAAATCTTGGGCCTTCACCCCAGAGGATGACCC
CACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAATGATGGCGCCGCATAACCAGATGA
TGGGGCCTCAGGGGCAAGTCTTGCTCCAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-451, - strand, RNAz p=0.994405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-451, - strand, RNAz p=0.994405

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               151-304, - strand, RNAmicro p=0.98405

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               151-304, - strand, RNAmicro p=0.98405

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-451, CR995753 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016G2432 5', 
(emb|CR995753.1|), blast E-value=0, identity=94.9% 
               

               
               1-448, B0142F01-5N NIA Mouse Neural Stem Cell (Differentiated) cDNA 
(gb|CA888090.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, B0485G08-5 NIA Mouse E6.5 Whole Embryo cDNA Library (Long) Mus 
(gb|CD564849.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, UI-M-GV0-cjg-e-06-0-UI.r1 NIH_BMAP_GV0 Mus musculus cDNA clone 
(gb|CF723163.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, UI-M-GV0-cjh-m-05-0-UI.r1 NIH_BMAP_GV0 Mus musculus cDNA clone 
(gb|CF723464.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, mk23h11.y1 Mouse retina, unamplified (gb|CK619422.1|), blast E-value=0, 
identity=93.53%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-451, CR995753 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016G2432 5', 
(emb|CR995753.1|), blast E-value=0, identity=94.9% 
               

               
               1-448, B0142F01-5N NIA Mouse Neural Stem Cell (Differentiated) cDNA 
(gb|CA888090.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, B0485G08-5 NIA Mouse E6.5 Whole Embryo cDNA Library (Long) Mus 
(gb|CD564849.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, UI-M-GV0-cjg-e-06-0-UI.r1 NIH_BMAP_GV0 Mus musculus cDNA clone 
(gb|CF723163.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, UI-M-GV0-cjh-m-05-0-UI.r1 NIH_BMAP_GV0 Mus musculus cDNA clone 
(gb|CF723464.1|), blast E-value=0, identity=93.53% 
               

               
               1-448, mk23h11.y1 Mouse retina, unamplified (gb|CK619422.1|), blast E-value=0, 
identity=93.53%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-451, gnl|bosTau2|chr13 (46805948-46806398)
               

               
               1-451, gnl|Hg17|chr20 (32801983-32801533)
               

               
               1-451, gnl|Mm7|chr2 (155156786-155156336)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-451, gnl|bosTau2|chr13 (46805948-46806398)
               

               
               1-451, gnl|Hg17|chr20 (32801983-32801533)
               

               
               1-451, gnl|Mm7|chr2 (155156786-155156336)

	1-451, CR995753 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016G2432 5', (emb\|CR995753.1\|), blast E-value=0, identity=94.9%
	1-448, B0142F01-5N NIA Mouse Neural Stem Cell (Differentiated) cDNA (gb\|CA888090.1\|), blast E-value=0, identity=93.53%
	1-448, B0485G08-5 NIA Mouse E6.5 Whole Embryo cDNA Library (Long) Mus (gb\|CD564849.1\|), blast E-value=0, identity=93.53%
	1-448, UI-M-GV0-cjg-e-06-0-UI.r1 NIH_BMAP_GV0 Mus musculus cDNA clone (gb\|CF723163.1\|), blast E-value=0, identity=93.53%
	1-448, UI-M-GV0-cjh-m-05-0-UI.r1 NIH_BMAP_GV0 Mus musculus cDNA clone (gb\|CF723464.1\|), blast E-value=0, identity=93.53%
	1-448, mk23h11.y1 Mouse retina, unamplified (gb\|CK619422.1\|), blast E-value=0, identity=93.53%

	1-451, gnl\|bosTau2\|chr13 (46805948-46806398)
	1-451, gnl\|Hg17\|chr20 (32801983-32801533)
	1-451, gnl\|Mm7\|chr2 (155156786-155156336)