Non-Coding RNA Search

SmaI-SSC10C09

Sequence:


               
               AACCNCGTGGTCTTCCAGGAGTTCCGGCAAAGATACGAGATCCTGACACCGAATTCCATC
CCCAAGGGCTTCATGGACGGGAAGCAGGCGTGTNTCCTCATGATCAAAGCCCTGGAGCTC
GACAGCAACCTGTACCGCATCGGCCAGAGCAAGGTCTTCTTCCGGGCGGGCGTGCTGGCC
CACCTGGAGGAGGAGCGGGACCTGAAGATCACGGACGTCATCATCGGCTTCCAGGCCTGC
TGCAGGGGCTACCTGGCCAGGAAGGCCTTTGCCAAGCGGCAGCAGCAGCTGACGGCCATN
AAGATCCTGCAGAGGAACTNCGCCGCCTACCTCAAGCTGCGCAACTGGCAGTGGTGGCGG
CTCTTCACCAAGGTTAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCNCGTGGTCTTCCAGGAGTTCCGGCAAAGATACGAGATCCTGACACCGAATTCCATC
CCCAAGGGCTTCATGGACGGGAAGCAGGCGTGTNTCCTCATGATCAAAGCCCTGGAGCTC
GACAGCAACCTGTACCGCATCGGCCAGAGCAAGGTCTTCTTCCGGGCGGGCGTGCTGGCC
CACCTGGAGGAGGAGCGGGACCTGAAGATCACGGACGTCATCATCGGCTTCCAGGCCTGC
TGCAGGGGCTACCTGGCCAGGAAGGCCTTTGCCAAGCGGCAGCAGCAGCTGACGGCCATN
AAGATCCTGCAGAGGAACTNCGCCGCCTACCTCAAGCTGCGCAACTGGCAGTGGTGGCGG
CTCTTCACCAAGGTTAAGCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q95272_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q95272_PIG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               137-264, + strand, RNAz p=0.89156
               

               
               141-264, + strand, RNAz p=0.784345

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-264, + strand, RNAz p=0.89156
               

               
               141-264, + strand, RNAz p=0.784345

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AB111886, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB111886, +

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               102-264, gnl|bosTau2|chr18 (49142488-49142650)
               

               
               102-264, gnl|canFam2|chr1 (109302326-109302201)
               

               
               102-264, gnl|danRer3|chr6 (3623019-3622894)
               

               
               102-264, gnl|dasNov1|scaffold_13706 (21096-20971)
               

               
               102-264, gnl|echTel1|scaffold_256474 (4874-4750)
               

               
               102-264, gnl|fr1|chrUn (147045219-147045335)
               

               
               102-264, gnl|galGal2|chr1 (48520983-48521108)
               

               
               102-264, gnl|hg17|chr19 (55456539-55456664)
               

               
               102-264, gnl|Hg17|chr19 (55456543-55456705)
               

               
               102-264, gnl|loxAfr1|scaffold_13931 (16405-16280)
               

               
               102-264, gnl|mm7|chr7 (40807072-40806947)
               

               
               102-264, gnl|Mm7|chr7 (40807066-40806904)
               

               
               102-264, gnl|oryCun1|scaffold_200353 (9578-9703)
               

               
               102-264, gnl|panTro1|chr23 (35184001-35183905)
               

               
               102-264, gnl|rheMac2|chr19 (56460119-56460244)
               

               
               102-264, gnl|rn3|chr1 (95185021-95184896)
               

               
               102-264, gnl|tetNig1|chrUn_random (27303809-27303934)
               

               
               102-264, gnl|xenTro1|scaffold_374 (819072-818947)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-264, gnl|bosTau2|chr18 (49142488-49142650)
               

               
               102-264, gnl|canFam2|chr1 (109302326-109302201)
               

               
               102-264, gnl|danRer3|chr6 (3623019-3622894)
               

               
               102-264, gnl|dasNov1|scaffold_13706 (21096-20971)
               

               
               102-264, gnl|echTel1|scaffold_256474 (4874-4750)
               

               
               102-264, gnl|fr1|chrUn (147045219-147045335)
               

               
               102-264, gnl|galGal2|chr1 (48520983-48521108)
               

               
               102-264, gnl|hg17|chr19 (55456539-55456664)
               

               
               102-264, gnl|Hg17|chr19 (55456543-55456705)
               

               
               102-264, gnl|loxAfr1|scaffold_13931 (16405-16280)
               

               
               102-264, gnl|mm7|chr7 (40807072-40806947)
               

               
               102-264, gnl|Mm7|chr7 (40807066-40806904)
               

               
               102-264, gnl|oryCun1|scaffold_200353 (9578-9703)
               

               
               102-264, gnl|panTro1|chr23 (35184001-35183905)
               

               
               102-264, gnl|rheMac2|chr19 (56460119-56460244)
               

               
               102-264, gnl|rn3|chr1 (95185021-95184896)
               

               
               102-264, gnl|tetNig1|chrUn_random (27303809-27303934)
               

               
               102-264, gnl|xenTro1|scaffold_374 (819072-818947)

	137-264, + strand, RNAz p=0.89156
	141-264, + strand, RNAz p=0.784345

	102-264, gnl\|bosTau2\|chr18 (49142488-49142650)
	102-264, gnl\|canFam2\|chr1 (109302326-109302201)
	102-264, gnl\|danRer3\|chr6 (3623019-3622894)
	102-264, gnl\|dasNov1\|scaffold_13706 (21096-20971)
	102-264, gnl\|echTel1\|scaffold_256474 (4874-4750)
	102-264, gnl\|fr1\|chrUn (147045219-147045335)
	102-264, gnl\|galGal2\|chr1 (48520983-48521108)
	102-264, gnl\|hg17\|chr19 (55456539-55456664)
	102-264, gnl\|Hg17\|chr19 (55456543-55456705)
	102-264, gnl\|loxAfr1\|scaffold_13931 (16405-16280)
	102-264, gnl\|mm7\|chr7 (40807072-40806947)
	102-264, gnl\|Mm7\|chr7 (40807066-40806904)
	102-264, gnl\|oryCun1\|scaffold_200353 (9578-9703)
	102-264, gnl\|panTro1\|chr23 (35184001-35183905)
	102-264, gnl\|rheMac2\|chr19 (56460119-56460244)
	102-264, gnl\|rn3\|chr1 (95185021-95184896)
	102-264, gnl\|tetNig1\|chrUn_random (27303809-27303934)
	102-264, gnl\|xenTro1\|scaffold_374 (819072-818947)